Pairwise Alignments

Query, 237 a.a., tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  204 bits (520), Expect = 9e-58
 Identities = 118/237 (49%), Positives = 147/237 (62%), Gaps = 8/237 (3%)

Query: 2   SVKILALDTATERCSVALLVGNTVYSRSEIAPRDHTKKVLPMVDEVLKEAGVTLQELDAL 61
           SV ILALDT TE CS AL     VY+    APR+H++++LPMV+ VLK+A + L +LD +
Sbjct: 7   SVCILALDTCTEACSAALYYQGQVYAELADAPREHSQRLLPMVESVLKQADIGLDKLDVI 66

Query: 62  AFGRGPGSFTGVRIGIGIAQGLAFGADLPMIGISTLAAMAQAAYRLQGLTHVASAIDARM 121
           A+GRGPGSFTG+RI   + QGLA G DLP+IGISTLAAMAQ A        V   IDARM
Sbjct: 67  AYGRGPGSFTGIRICTSMTQGLALGLDLPVIGISTLAAMAQMAIAEHAAEQVLCCIDARM 126

Query: 122 EEVYWGRYVRQEDGSWQVAEAECVIAPALLAQTLTQDDLTQDEQIWATAGTGWDAYPALA 181
            EVYWG++V   DG   +   E V AP  +   L  +      +     GTG+DAYP L 
Sbjct: 127 GEVYWGQFV-AVDGIATLVGQEVVSAPEQIQLALEMN------KPIVGCGTGFDAYPNLF 179

Query: 182 DLPLQL-QTSEVLYPDAQDMAYLAQFELAQGNKVSVEQASPVYLRDTVAWKKLPGRE 237
                +   +EV YPDA+ M  LA+  +  G   SV++  PVYLRDTV WKKLPGRE
Sbjct: 180 SFGKGITPLAEVKYPDARAMLTLAEVGIKAGLTTSVDELEPVYLRDTVTWKKLPGRE 236