Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., AMP-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  230 bits (586), Expect = 1e-64
 Identities = 168/551 (30%), Positives = 270/551 (49%), Gaps = 31/551 (5%)

Query: 27  EMFEQSVHKYADQPAFM--NMGAVMTFRKLEERSRAFAAYLQNDLKLKKGDRVALMMPNL 84
           E+F+Q+V +Y +  A +  +     T+++L E     A  L   L LK GDR+ +  PN 
Sbjct: 28  EVFDQTVARYPEGEALVVRHQSLRYTWQQLAEAVDLHARALLA-LGLKTGDRLGVWAPNC 86

Query: 85  LQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAIVIVSNFANTLEQIVANTQV 144
            Q+ ++ F   + G+I VN+NP Y   ELE+ L  +  + +V    F  +    +  T  
Sbjct: 87  AQWCISQFASAKLGVILVNINPAYRVSELEYVLKQSGCQWLVCAGAFKTSDYHAMLQTLA 146

Query: 145 KHVVLTSLGQM----LPRAKGTIVDFVVKYVKGMVPKYDLPG---AISMRKALHKGRRLQ 197
             +    +GQM    LP  +G ++    +   G +P   L     A++  +   +   L+
Sbjct: 147 PELAEQPIGQMQSERLPELRG-VISLDSQPPAGFLPWSQLAALGAAVTPGQLAERQSSLR 205

Query: 198 YVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYGPVLQEGRELVVTAL 257
           + +P         +QYT GTTG  KGA L+H N++ N      + G  L  G  LV+  +
Sbjct: 206 FDQPVN-------IQYTSGTTGFPKGATLSHHNILNNGYMVGESLG--LTAGDRLVIP-V 255

Query: 258 PLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPFTAITGVNTLFNALVNNE 317
           PLYH F + +  L  +  G   +   +  D    +K + +   TA+ GV T+F AL++  
Sbjct: 256 PLYHCFGMVMGNLGCMTHGSTMIYPNDAFDPLLTLKAVAEEKATALYGVPTMFIALLDQP 315

Query: 318 DFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLE---GYGLTECSP--LVTGNPYD 372
              + D  +++  +  G      V  R      +H+ E    YG+TE SP  L TG   +
Sbjct: 316 QRGDFDLSSLRTGIMAGATCPIEVMRR--VINEMHMAEVQIAYGMTETSPVSLQTGPSDE 373

Query: 373 LTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQRPEATKEVLNAE 432
           L      +G   P  E +I+D+AGN+V    VGEL  RG  VM GYW  P+ T + ++ E
Sbjct: 374 LELRVTTVGRTQPQLESKIIDEAGNLVSRGAVGELCTRGYSVMLGYWNNPKGTSDAIDPE 433

Query: 433 GWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGKVLEVAAIGQAND 492
           GW+ TGD+   D+QG + IV R KDMI+  G N+YP E+E+    H  V +V  IG    
Sbjct: 434 GWMHTGDLATMDEQGYVCIVGRNKDMIIRGGENIYPRELEEFFFTHPAVADVQVIGIPCS 493

Query: 493 VSGELVKIYVVKRDP--SLTKDEVIAHCRKHLTGYKVPKLVEFRDDLPKTNVGKILRRVL 550
             GE +  + +K  P  S ++ E+ A C++ +  +K P+  +F ++ P T  GKI +  +
Sbjct: 494 RYGEEIVAW-IKFHPGHSASEQELQAWCKERIAHFKTPRHFKFVEEFPMTVTGKIQKFRM 552

Query: 551 REENDAQLAAK 561
           RE +  +L  K
Sbjct: 553 REISIEELRDK 563