Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II from Pseudomonas stutzeri RCH2

 Score =  430 bits (1105), Expect = e-125
 Identities = 227/538 (42%), Positives = 334/538 (62%), Gaps = 26/538 (4%)

Query: 22  YPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRAFAAYLQNDLKLKKGDRVALMM 81
           Y ++ ++  ++   +  + AF      +T+ +L  R+ AFA YL+    L+ GDR+AL +
Sbjct: 18  YQNVHDLLSRACATHPQRTAFSCGDDHLTYAELGSRADAFARYLRYHAGLQPGDRLALQL 77

Query: 82  PNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAIVIVSNFANTLEQIVAN 141
           PN LQYP+A+FG L+AG++ VN NP YT  E  HQ +D+ A+AI+++      +  + A+
Sbjct: 78  PNCLQYPIAVFGALKAGLVIVNTNPQYTAAEARHQFHDSGAKAILVLDRLLPQVRAVQAD 137

Query: 142 TQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLP--GAISMRKALHKGRRLQYV 199
           T ++ ++LTS+  +                    P Y+    G +   +AL  G +   V
Sbjct: 138 TALRQIILTSVDDL------------------QQPIYESQEDGTLRFMQALRLGEQRSPV 179

Query: 200 KPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYGP--VLQEGRELVVTAL 257
           +     + +A LQYTGGTTGV+KGA+LTHRN++ANVLQ    +    +L+  +++ +  L
Sbjct: 180 QREAGLDRLALLQYTGGTTGVSKGAMLTHRNLLANVLQTIELFDQPGLLEPEKDVRIAPL 239

Query: 258 PLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPFTAITGVNTLFNALVNNE 317
           PLYH+ A   NCL  + MG   + I + R++   +  +Q++PF+ ++G+NTLF  L+N+ 
Sbjct: 240 PLYHIMAFATNCLSSVGMGLHTVFIRDGRNLDETIGAMQRHPFSLLSGINTLFVGLMNHP 299

Query: 318 DFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGYGLTECSPLV-TGNPYDLTDY 376
           +F  +DF ++K A  GG  +   V  RW+  TG  + EG+GLTE SP+V TG    L+ Y
Sbjct: 300 EFRSIDFSHLKWATSGGAPLNSEVGRRWQALTGAPIREGFGLTEASPVVATGT--QLSPY 357

Query: 377 T-GAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQRPEATKEVLNAEGWL 435
             G IG  +  TE+R VDD GN VP +  GEL +RGPQVMQGYWQRP+ T +VL  +GWL
Sbjct: 358 REGYIGQALIETELRTVDDEGNDVPPETPGELWLRGPQVMQGYWQRPDETAKVLTPDGWL 417

Query: 436 STGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGKVLEVAAIGQANDVSG 495
            TGDI   D  G + IVDRKKDMILVSGFNV+PNEIEDV+  H  V E  A+G  +   G
Sbjct: 418 KTGDIALLDVDGFVKIVDRKKDMILVSGFNVFPNEIEDVLMQHPSVRECVAVGVPDARKG 477

Query: 496 ELVKIYVVKRDPSLTKDEVIAHCRKHLTGYKVPKLVEFRDDLPKTNVGKILRRVLREE 553
           E VK++V  +D ++ +  ++ HCR++LTGYK+P  +E RD+LPKT VGK+LRR LR+E
Sbjct: 478 EAVKVFVSLKDDTVDERALLEHCRQYLTGYKMPSFLELRDELPKTAVGKLLRRQLRDE 535