Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II from Pseudomonas stutzeri RCH2

 Score =  221 bits (564), Expect = 5e-62
 Identities = 152/503 (30%), Positives = 245/503 (48%), Gaps = 26/503 (5%)

Query: 69  LKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAIVIV 128
           L L+ G+RV +  PN  Q+ +  F   + G++ VN+NP Y   ELE+ L  +  R ++  
Sbjct: 65  LGLQAGERVGIWSPNNAQWCITQFATAKIGVVLVNINPAYRLSELEYALKQSGCRWLICA 124

Query: 129 SNFANTLEQIVANTQVKHVVLTSLG----QMLPRAKGTIVDFVVKYVKGMVP---KYDLP 181
             F  +    + +  +  +   ++G     MLP  +G ++    K V GM+      ++ 
Sbjct: 125 DAFKTSDYHAMLHELLPELESAAVGALQSHMLPELRG-VISLCDKPVDGMLQWQALMEMA 183

Query: 182 GAISMRKALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGA 241
             +   +    G RLQ+  P         +QYT GTTG  KGA L+H N++ N      +
Sbjct: 184 EQVGPEQLRQCGERLQFDDPIN-------IQYTSGTTGFPKGATLSHYNILNNGYMVGES 236

Query: 242 YGPVLQEGRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPFT 301
               L E   LV+  +PLYH F + +  L  +  G   +  +   +    ++   +   T
Sbjct: 237 LR--LTEHDRLVIP-VPLYHCFGMVMGNLGCVTHGTTMIYPSAAFEPLAALQAAAEEKAT 293

Query: 302 AITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLE---GYG 358
            + GV T+F A++++ +   LD  +++  +  G      V +R      +HL E    YG
Sbjct: 294 GMYGVPTMFIAMLDHPERQSLDLSSLRTGIMAGSTCPIEVMKR--VIDDMHLAEMQIAYG 351

Query: 359 LTECSPLVTGNPYD--LTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQ 416
           +TE SP+ T    D  L     ++G   P  E +IVD+ G VVP  Q+GEL  RG  VM 
Sbjct: 352 MTETSPVSTQTSADDDLERRVTSVGRTQPHLESKIVDEHGAVVPRGQIGELCTRGYSVML 411

Query: 417 GYWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVA 476
           GYW  P+AT++ ++   W+ TGD+   DD+G I IV R KDMI+  G NVYP EIE+ + 
Sbjct: 412 GYWNNPDATRDAIDGARWMHTGDLAVMDDEGYIKIVGRNKDMIIRGGENVYPREIEEFLF 471

Query: 477 LHGKVLEVAAIGQANDVSGELVKIYVVKRDPSLTKDEVIAH-CRKHLTGYKVPKLVEFRD 535
            H  V +V  IG  +   GE +  +V        + E +   C+  +  +K P+ ++F D
Sbjct: 472 THPAVADVQVIGVPDSKFGEEIVAWVKLHPGHEVEGEALREFCKGRIAHFKTPRHIKFVD 531

Query: 536 DLPKTNVGKILRRVLREENDAQL 558
           D P T  GK+ +  +RE +  +L
Sbjct: 532 DFPMTISGKVQKFRMREISVVEL 554