Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  307 bits (787), Expect = 6e-88
 Identities = 191/546 (34%), Positives = 300/546 (54%), Gaps = 16/546 (2%)

Query: 28  MFEQSVHKYADQPAFMNMGAVMTFRKLEER-SRAFAAYLQNDLKLKKGDRVALMMPNLLQ 86
           M +  + ++ D PA   +G   T+R+L E+  RA A +    L ++ G RV L +PN   
Sbjct: 28  MLDAIIARFPDNPAIDFLGRKWTYRELGEQIDRACAGF--QSLGVEPGTRVGLCLPNTPY 85

Query: 87  YPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAIVIVS--NFANTLEQIVANTQV 144
           Y +  +GVL+AG I VN NPLY  REL   + D+    +V +        +  ++ +T +
Sbjct: 86  YIICYYGVLKAGGIVVNFNPLYVERELRELVEDSGTTLMVTLDLRQIYPKVAALLGDTAL 145

Query: 145 KHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLPGAISMRKALHKGRRLQYVKPFMS 204
           + +V+ S+  +LP  K  +   + +     VP        +   A     R   + P  +
Sbjct: 146 ERIVVCSMSAILPSVKSLLFSVLKRSELADVPTDRRHIGFAKLIATKTPPRPVAIDPATA 205

Query: 205 GEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYGPVLQEGRELVVTALPLYHVFA 264
              +A LQYTGGTTG+ KGA+LTH N+  N+ Q  G + P  + G E ++  LP +HVFA
Sbjct: 206 ---VAVLQYTGGTTGLPKGAMLTHANVTGNLTQILGWF-PEARWGEEKMLAVLPFFHVFA 261

Query: 265 LTVNCLLFIEMGGRNLLITNPR-DIPGFVKELQKYPFTAITGVNTLFNALVNNEDFHELD 323
           +TV   + + +G   +L+  PR D+   +K + +   T   GV T+++A++        D
Sbjct: 262 MTVAMNVALALGAELILL--PRFDLETVLKTIARKKPTLFPGVPTIYSAIIGAVAKTPYD 319

Query: 324 FKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGYGLTECSPLVTGNPYDLTDYTGAIGLP 383
             +++  + GG  +   V  R+++ TG  L+EGYGL+E SP+V  NP D     G+IG P
Sbjct: 320 LSSLRFCLSGGAPLPIEVKTRFEELTGCTLIEGYGLSEASPVVCCNPLDGAIKPGSIGQP 379

Query: 384 VPST--EVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQRPEATKEVLNAEGWLSTGDIV 441
           +P T  E+R V D   +VP  + GE+ VRGPQVM GYW+RP+ T++    +G L TGDI 
Sbjct: 380 LPGTTVEIRSVLDPALIVPRGERGEICVRGPQVMAGYWRRPQDTEDTF-IDGALRTGDIG 438

Query: 442 KFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGKVLEVAAIGQANDVSGELVKIY 501
             DD+G + +VDR KD+IL  G+NVYP  IE+ +  H  V E   IG  +D  GE  K +
Sbjct: 439 YIDDEGYVFLVDRIKDVILCGGYNVYPRIIEEALYQHEAVAEAVVIGLPDDYRGEAPKAF 498

Query: 502 VVKRD-PSLTKDEVIAHCRKHLTGYKVPKLVEFRDDLPKTNVGKILRRVLREENDAQLAA 560
           V  RD  S T +++  +    ++  ++PK +E RDDLP+T VGK+ ++ L +E  A+  A
Sbjct: 499 VRLRDGHSATPEDLKTYLATQISRIEMPKTIELRDDLPRTMVGKLSKKALVDEERAKALA 558

Query: 561 KAKQSA 566
            A +++
Sbjct: 559 GADKAS 564