Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., dicarboxylate--CoA ligase PimA from Rhodopseudomonas palustris CGA009

 Score =  266 bits (681), Expect = 1e-75
 Identities = 187/540 (34%), Positives = 282/540 (52%), Gaps = 29/540 (5%)

Query: 24  SLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRAFAAYLQNDLKLKKGDRVALMMPN 83
           +L E+  Q+   YA +PA       +T+ KLE  +   AA L       +   VAL + N
Sbjct: 23  TLPELLAQAAKDYASRPALEFRDRQITYTKLEAMAETAAAALLA-AGYGRDSSVALYIGN 81

Query: 84  LLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAIVIVSNFA--NTLEQIVAN 141
              +P+  FG L+AG   V+++PL   R L H+L+D+ AR ++   + A     E+ +A 
Sbjct: 82  TPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARVLITTDSAALLPMAERFLAK 141

Query: 142 TQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLPGAISMRKALHKGRRLQYVKP 201
             +  +++ S       A              + P    P  I+    + KG       P
Sbjct: 142 GLLDRLIVCSDASWGESATP------------LAPLPSDPRVITYADFI-KGASKPMAWP 188

Query: 202 FMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYGPVLQE--GRELVVTALPL 259
            +  +DIA LQYTGGTTG+ KGA+LTH N+ + V      +G V     G   V+  LPL
Sbjct: 189 AIVPDDIALLQYTGGTTGLPKGAMLTHSNLTSAVA-IYDVWGLVRANSGGIHRVICVLPL 247

Query: 260 YHVFALTVNCLLFIEMGGRNLLITNPR-DIPGFVKELQKYPFTAITGVNTLFNALVNNED 318
           +H++ALTV  L  ++ G  +L+  + R D+    +++++   T   GV T++ AL N+  
Sbjct: 248 FHIYALTVILLRCLKQG--DLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS 305

Query: 319 FHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGYGLTE-CSPLVTGNPYDLTDYT 377
             + D  ++ +A  GG  +   VA  +++ T + L  G+G+TE CSP  TG+P +  D  
Sbjct: 306 LEKRDLSSLTMAGSGGAPLPVEVARLFERKTNLKLKSGWGMTETCSP-GTGHPPEGPDKP 364

Query: 378 GAIGLPVPSTEVRIV--DDAGNVVPNDQVGELQVRGPQVMQGYWQRPEATKEVLNAEGWL 435
           G+IGL +P  E+ +V  DD   V+P  +VGEL+VRGP V +GYW RPE +      + +L
Sbjct: 365 GSIGLMLPGIELDVVALDDPKRVLPPGEVGELRVRGPNVTKGYWNRPEESAHSFVGDRFL 424

Query: 436 STGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGKVLEVAAIGQANDVSG 495
            TGDI   D  G   +VDRKKDMI+  GFNVYP  IE  +  H  V EV  IG  +D  G
Sbjct: 425 -TGDIGYMDQDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPAVQEVIVIGVPDDYRG 483

Query: 496 ELVKIYVVKRDPS--LTKDEVIAHCRKHLTGYKVPKLVEFRDDLPKTNVGKILRRVLREE 553
           E  K +V  R+ +   + DE+ A     L  +++P  VEF D+LP+T VGK+ R  LR +
Sbjct: 484 EAAKAFVKLREGAKPFSIDELRAFLTGKLGKHELPTAVEFLDELPRTTVGKLSRHELRSQ 543