Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

 Score =  462 bits (1188), Expect = e-134
 Identities = 237/543 (43%), Positives = 346/543 (63%), Gaps = 27/543 (4%)

Query: 17  INPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRAFAAYLQNDLKLKKGDR 76
           ++  +Y SL+++ E +  +Y D+ A++ +G   +F  +E  SR FAAYLQ   +L+ GD+
Sbjct: 9   VDLQKYASLIDLIETAAERYGDKTAYVCLGKASSFADIERDSRYFAAYLQQHTQLEVGDK 68

Query: 77  VALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAIVIVSNFANTLE 136
           VA+ +PN+ Q+ +A +G LRAGMI VN NPLYT REL HQ  D+DA+A+V++S+   TLE
Sbjct: 69  VAIQLPNITQFVIAAYGALRAGMILVNTNPLYTQRELIHQYRDSDAKALVVLSDLLPTLE 128

Query: 137 QIVANTQVKHVVLTSLGQML---PRAKGTIVDFVVKYVKGMVPKYDLPGAISMRKALHKG 193
            ++  TQ++ V+ T    ++   P+A   +                    I   + L  G
Sbjct: 129 TVIPETQIETVISTHPLDLIATQPQADSQLAH------------------IGFNQVLALG 170

Query: 194 RRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYGPVLQEGRELV 253
            + +Y    ++ + +A LQYTGGTTG++KGA+L+H N++AN+LQ +        EG E+ 
Sbjct: 171 SQAEYRPVEVAQQSLAALQYTGGTTGLSKGAMLSHSNLLANMLQVQSRLASKFVEGEEIF 230

Query: 254 VTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPFTAITGVNTLFNAL 313
           +  LP+YH++A  VN + F E GG ++LI NPRDI   ++ + ++PFT   G+NTLF  L
Sbjct: 231 IAPLPIYHIYAFMVNFVYF-EQGGCSVLIPNPRDISALIQTMSQHPFTGFAGLNTLFVGL 289

Query: 314 VNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGYGLTECSPLVTGNPYDL 373
            + + F  LDF ++K+ + GG A+ +A A  W+ TTG  + EGYGL+E SP+V+ N   L
Sbjct: 290 CHQQSFQALDFSHLKITISGGTALTQAAASIWQSTTGCTISEGYGLSETSPVVSLNAPGL 349

Query: 374 TDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQRPEATKEVLNAEG 433
            +  G IG PV  T+V+I+D +   VP  ++GEL V+GPQVM GYWQ+PE T +V+ ++G
Sbjct: 350 -ECLGTIGRPVIDTQVKILDASEQEVPQGEIGELAVKGPQVMSGYWQKPEETAKVMTSDG 408

Query: 434 WLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGKVLEVAAIGQANDV 493
           +  TGDI    + G+  IVDRKKDMI+VSGFNVYPNE+EDV+A H  VLE A IG  +  
Sbjct: 409 FFKTGDIALATEDGMHKIVDRKKDMIIVSGFNVYPNEVEDVLAAHESVLECAVIGVDDSR 468

Query: 494 SGELVKIYVVKRDPSL----TKDEVIAHCRKHLTGYKVPKLVEFRDDLPKTNVGKILRRV 549
           SGE VK  +V R+P L    TK  ++ HCR  L  YK+PK++EF   LPK+ VGKILRR 
Sbjct: 469 SGEAVKAAIVLREPELANDATKQALLEHCRAQLAAYKLPKIIEFMPALPKSTVGKILRRE 528

Query: 550 LRE 552
           LR+
Sbjct: 529 LRK 531