Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., acyl-CoA synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (562), Expect = 8e-62
 Identities = 153/556 (27%), Positives = 270/556 (48%), Gaps = 28/556 (5%)

Query: 7   SRYPKDVP-ETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRAFAAYL 65
           +R+PK    E I P     + E           + A    G  +T+ +L+E S  FA  L
Sbjct: 16  ARWPKGTTREPIYPHGEKPVTEYLSAWARLNPTKVAIQFYGYELTYAQLDEMSTRFANVL 75

Query: 66  QNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAI 125
           +  L + +GD VA+ MPN  Q+ +A  G+L+ G + + V+PL    EL HQL D+  +  
Sbjct: 76  RG-LGVGQGDGVAVFMPNCPQFHIAFLGILKCGAVHMPVSPLSKEMELRHQLGDSQPKVA 134

Query: 126 VIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLP-GAI 184
           +       T+  +     ++H++ TS   + PRA   ++  + +     +PK  L  G I
Sbjct: 135 LCYDALLPTMRPVCQELGIEHIITTSYTDVRPRAITAVLPDLFE-----IPKTPLADGII 189

Query: 185 SMRKALHKGRR--LQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGA- 241
              +A+    +  L Y+      +D+A + YT GTTG+ KG + THRNM+  +       
Sbjct: 190 DFFEAIDNASKEVLDYIPAL---DDLAAINYTSGTTGMPKGVMHTHRNMIGTMASYYPVT 246

Query: 242 YGPVLQEGRELVVTA-LPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPF 300
           +G V  EG +LV+ + LP + +       LL +   G  L++    D   F++ +  +  
Sbjct: 247 FGEVGPEGTDLVMLSFLPEFWIAGEDTGLLLPL-YSGATLVLMARWDTKAFMELVHHHKV 305

Query: 301 TAITGVNTLFNALVNNEDFHELDFKNMKLA--VGGGMAVQRAVAERWKKTTGVHLLE-GY 357
                +    + ++N+   H+ D  ++     +     + R   +RW++ TG  L E  Y
Sbjct: 306 NMTIMLIDSVDEILNHPHLHQFDLTSLTTVPCISFIKKLNRDYRQRWRELTGTTLFEVAY 365

Query: 358 GLTE---CSPLVTG---NPYDLTDYTGAIGLPVPSTEVRIVDDA-GNVVPNDQVGELQVR 410
           G+TE   C     G   +  DL+     +GLPVP TE++I D   G ++P    GE+Q+R
Sbjct: 366 GMTETHTCDTFTRGFQVDDMDLSFDPAFLGLPVPGTEIKICDFVTGELMPLGVEGEIQIR 425

Query: 411 GPQVMQGYWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNE 470
            P +++GYW +P+  K +    GW  TGD+    ++G    + R+K+M+ V+G +V+P E
Sbjct: 426 TPTLLKGYWNKPDLNKNLFEEGGWYRTGDLGMITEEGFFRYLGRRKEMLKVNGMSVFPTE 485

Query: 471 IEDVVALHGKVLEVAAIGQANDVSGEL-VKIYVVKRDPSLTKDEVIAHCRKHLTGYKVPK 529
           +E ++  H  +     +G+ ++  G++ V    +K     T++ + A C   +  +KVP+
Sbjct: 486 VESMLGQHPAIASCGVVGRPDERKGQVPVAFVTLKPGFDETQESLQAWCVNAMAIFKVPE 545

Query: 530 LVEFRDDLPKTNVGKI 545
            +  ++ LP T  GKI
Sbjct: 546 -IRIQERLPMTATGKI 560