Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (RefSeq) from Shewanella loihica PV-4

 Score =  795 bits (2052), Expect = 0.0
 Identities = 382/553 (69%), Positives = 469/553 (84%)

Query: 1   MDKPWLSRYPKDVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRA 60
           M++ W    P DVP  I+  QY SL+++FE SV KYADQPAF+NMGA +T+RKLEERSRA
Sbjct: 1   MEQLWTKNLPHDVPAIIDAKQYSSLIDLFESSVAKYADQPAFVNMGATLTYRKLEERSRA 60

Query: 61  FAAYLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDA 120
           FAAYLQN+LKL+KGDRVA+MMPNLLQYP+ALFG+LRAGM+ VNVNPLYTPREL+HQLND+
Sbjct: 61  FAAYLQNELKLQKGDRVAIMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLNDS 120

Query: 121 DARAIVIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDL 180
            A+AIV+VSNFANTLEQ+V  T VK V+LT LG +L   K T+V+FVVKY+K MVPKY L
Sbjct: 121 GAKAIVVVSNFANTLEQVVEQTPVKSVILTGLGDLLSAPKRTLVNFVVKYIKKMVPKYHL 180

Query: 181 PGAISMRKALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKG 240
           P AISMR++L KGRRLQYVKP + G+DIAFLQYTGGTTGV+KGA+LTH N+V+N+LQA  
Sbjct: 181 PHAISMRQSLSKGRRLQYVKPTIKGDDIAFLQYTGGTTGVSKGAMLTHGNIVSNLLQADA 240

Query: 241 AYGPVLQEGRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPF 300
           AY P+L +G+E VVTALPLYH+FALTVNCLLF+  G  NLLITNPRDIP FV EL+K+PF
Sbjct: 241 AYSPLLADGKEFVVTALPLYHIFALTVNCLLFLHKGANNLLITNPRDIPAFVSELKKHPF 300

Query: 301 TAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGYGLT 360
           TA+TGVNTLFNALV++E+F  LDF N+KL++GGGMAVQRAVA++W+  T   LLEGYGLT
Sbjct: 301 TALTGVNTLFNALVSSEEFKTLDFSNLKLSIGGGMAVQRAVADKWQGITKTRLLEGYGLT 360

Query: 361 ECSPLVTGNPYDLTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQ 420
           E SPL+T  PY+L  Y G+IG PV +T++++ D+ GNV+P  + GEL  +GPQVM+GYWQ
Sbjct: 361 EASPLLTCCPYNLEGYNGSIGFPVANTDMQVRDEEGNVLPQGETGELFAKGPQVMKGYWQ 420

Query: 421 RPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGK 480
           RPE T +V++ +G+L+TGDI   D+QG   IVDRKKDMILVSGFNV+PNE+E+VVALH K
Sbjct: 421 RPEETAKVIDKDGYLATGDIGYMDEQGFFFIVDRKKDMILVSGFNVFPNEVEEVVALHPK 480

Query: 481 VLEVAAIGQANDVSGELVKIYVVKRDPSLTKDEVIAHCRKHLTGYKVPKLVEFRDDLPKT 540
           VLEVAA+G  ++VSGELVK++VV +D SLT+++VI HCR HLTGYK+PKLVEFRD+LPK+
Sbjct: 481 VLEVAAVGVPHEVSGELVKVFVVPKDKSLTEEQVIKHCRHHLTGYKIPKLVEFRDELPKS 540

Query: 541 NVGKILRRVLREE 553
           NVGKILRR LR+E
Sbjct: 541 NVGKILRRELRDE 553