Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 583 a.a., AMP-dependent synthetase and ligase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  355 bits (912), Expect = e-102
 Identities = 213/569 (37%), Positives = 319/569 (56%), Gaps = 12/569 (2%)

Query: 2   DKPWLSRYPKDVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRAF 61
           D PWL+ Y   VP  I+ + +P L  + +++  +   + A       +++ KL + +   
Sbjct: 9   DFPWLASYDAGVPANISYETFP-LFTLLDRAAERTPRRTAIAFRNYRISYAKLRQLAEVM 67

Query: 62  AAYLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDAD 121
           AA L+    +++GD+V++M+PNL Q  +A + VL+AG + V  NPLY  +EL HQ++D+ 
Sbjct: 68  AANLRAQ-GVRRGDKVSIMLPNLPQTVIAFWAVLKAGGVVVMTNPLYMEKELVHQIHDSG 126

Query: 122 ARAIVIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLP 181
           AR ++ +      +E +     +    LT +G  L      +  F  K  +G   +    
Sbjct: 127 ARFMIALDLVWPKIEPLREKLGIDKYFLTRIGDGLAFPLNFLYAFKAKR-EGTWRELPFD 185

Query: 182 GA-ISMRKALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKG 240
           G  +   K L KG+           ED+A LQYTGGTTG++KG +LTH NM  NV Q   
Sbjct: 186 GRHVLPWKTLLKGKVRHSTTTCNPTEDLAVLQYTGGTTGISKGVMLTHHNMSVNVQQITT 245

Query: 241 AYGPVLQEGRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKE-LQKYP 299
             G   ++     +  +P +HV+ LT    L   +     ++  PR +P  V   +QK+ 
Sbjct: 246 ILGDA-RDMDHCFLGLMPYFHVYGLTTCLTLPTALAAT--IVPFPRYVPRDVLVGIQKHK 302

Query: 300 FTAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGYGL 359
            T   G  +++ +L+  ++  + D  +++  + G   +     +R+++ TG  ++EG+GL
Sbjct: 303 PTIFPGAPSIYISLMQQKEVGDYDLTSIRYCISGSAPMPVEHIKRFRELTGAQVIEGFGL 362

Query: 360 TECSPLVTGNPYDLTDYTGAIGLPVPSTEVRIVD-DAGNV-VPNDQVGELQVRGPQVMQG 417
           TE SP+   NP      TG+IG+P P TE RIVD + G V +P  +VGEL +RGPQVM+G
Sbjct: 363 TEASPVTHLNPIHGVSKTGSIGIPFPDTEARIVDMEVGQVPLPAGKVGELIIRGPQVMKG 422

Query: 418 YWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVAL 477
           YW RP+ T   L   GWL TGDI   D+ G   IVDRKKDM LV G+NVYP EI++V+  
Sbjct: 423 YWNRPDETANTLR-NGWLYTGDIAIMDEDGYFTIVDRKKDMFLVGGYNVYPREIDEVLHE 481

Query: 478 HGKVLEVAAIGQANDVSGELVKIYVV-KRDPSLTKDEVIAHCRKHLTGYKVPKLVEFRDD 536
           H K+ E   +G  +   GE++K +VV K    LTK EV+AHCR+ L  YKVPK VEFRDD
Sbjct: 482 HPKIKEAVTVGVPHPTRGEMIKAFVVVKPGEKLTKAEVVAHCREKLASYKVPKQVEFRDD 541

Query: 537 LPKTNVGKILRRVLREENDAQLAAKAKQS 565
           LPKT VGK+LRR+LR E + +L A+   S
Sbjct: 542 LPKTVVGKVLRRILRTEEEEKLKAELAAS 570