Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  820 bits (2117), Expect = 0.0
 Identities = 390/553 (70%), Positives = 473/553 (85%)

Query: 1   MDKPWLSRYPKDVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRA 60
           MD+PW+   PKDVP  IN DQY SL++MFE +V KYADQPAF+NMGA +T+RKLEERSRA
Sbjct: 1   MDQPWIRHLPKDVPAEINVDQYSSLIDMFETAVAKYADQPAFINMGATLTYRKLEERSRA 60

Query: 61  FAAYLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDA 120
           FAAYLQN+LKL+KGDRVALMMPNLLQYP+ALFG+LRAGM+ VNVNPLYTPREL+HQL D+
Sbjct: 61  FAAYLQNELKLQKGDRVALMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLIDS 120

Query: 121 DARAIVIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDL 180
            A+AIV+VSNFA TLE++V  T VK V++T LG +L   K T+V+FVVKY+K +VPKYDL
Sbjct: 121 GAKAIVVVSNFARTLEEVVDQTPVKSVIITGLGDLLSAPKRTLVNFVVKYIKKLVPKYDL 180

Query: 181 PGAISMRKALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKG 240
           P A+SMR+ L +GRR+QYVKP ++G+D+AFLQYTGGTTGV+KGA+LTH N+VANVLQA G
Sbjct: 181 PHALSMRETLSRGRRMQYVKPVITGDDLAFLQYTGGTTGVSKGAMLTHSNVVANVLQANG 240

Query: 241 AYGPVLQEGRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPF 300
           AY P L++G E VVTALPLYH+FALTVNCLLF+  G +NLLITNPRDIPGFV EL+KYPF
Sbjct: 241 AYSPALRDGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPF 300

Query: 301 TAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGYGLT 360
           TA+TGVNTLFNALVN+ DF ELDF  +KL++GGGMAVQ+AVA++W+  T   LLEGYGLT
Sbjct: 301 TALTGVNTLFNALVNSSDFSELDFSRLKLSIGGGMAVQKAVADKWQNITKTRLLEGYGLT 360

Query: 361 ECSPLVTGNPYDLTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQ 420
           E SPL+T  PY+L  Y G+IG P PST +++ DDAGNV+P  + GEL  +GPQ+M+GYWQ
Sbjct: 361 EASPLLTCCPYNLDGYNGSIGFPAPSTLIQVRDDAGNVLPQGETGELFGKGPQIMKGYWQ 420

Query: 421 RPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGK 480
           RPE T +V++ +GWL+TGDI   D+QG  +IVDRKKDMILVSGFNV+PNE+E+VVALH K
Sbjct: 421 RPEETAKVIDNDGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK 480

Query: 481 VLEVAAIGQANDVSGELVKIYVVKRDPSLTKDEVIAHCRKHLTGYKVPKLVEFRDDLPKT 540
           V+EVAA+G  ND SGELVK++VVK+D SLT +++I HCR HLTGYKVPKLVEFRD+LPKT
Sbjct: 481 VIEVAAVGVPNDASGELVKVFVVKKDKSLTAEDIIKHCRVHLTGYKVPKLVEFRDELPKT 540

Query: 541 NVGKILRRVLREE 553
           NVGKILRR LR+E
Sbjct: 541 NVGKILRRELRDE 553