Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  231 bits (590), Expect = 5e-65
 Identities = 173/567 (30%), Positives = 282/567 (49%), Gaps = 44/567 (7%)

Query: 15  ETINPDQY-----PSLVEMFEQSVHKYADQPA--FMNMGAVMT--------FRKLEERSR 59
           +TI+P +Y     P+  E+ E+++ +Y D  A  +    AV+         +R+   R  
Sbjct: 15  QTISPLKYSEFRGPNAPELVEKTIGQYLDDIANTYPEQLAVVVNHQDIRWNYRQYLARID 74

Query: 60  AFAAYLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLND 119
           A AA L   L +  GDR+ +  PN +++ +  F   + G I V +NP Y P EL++ L +
Sbjct: 75  ALAAGLLK-LGIGPGDRIGIWSPNNIEWCLTQFATAKIGAIMVCINPAYRPEELQYALTN 133

Query: 120 ADARAIVIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKY----VKGMV 175
              RA++    F ++    +  T    +   + GQ+  +A   +  FV++       GM+
Sbjct: 134 VGCRAVICADKFKSSNYLQMLYTLAPELKECAAGQLQAKALPEL-QFVIRMGAEKSPGML 192

Query: 176 PKYDLPGAISMR-KALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVAN 234
              DL   +S   KA+     L+ +   +S  D   +Q+T GTTG  KGA L+H N++ N
Sbjct: 193 NFDDLLVEVSADDKAM-----LERIANGLSPYDAINIQFTSGTTGSPKGATLSHHNILNN 247

Query: 235 VLQAKGAYGPVLQEGREL-----VVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIP 289
                   G ++ E  +      +   +PLYH F + +  L+ +  G   +   +  D  
Sbjct: 248 --------GYLVAEAMKFTCDDKLCIPVPLYHCFGMVLGNLVCLAKGAAAVFPGDSFDPL 299

Query: 290 GFVKELQKYPFTAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTT 349
             ++ +++   TA+ GV T+F A + + +F   D  +++  V  G      V  R ++  
Sbjct: 300 TTLEVVERERCTALHGVPTMFIAELEHPEFTRFDLSSLRTGVMAGATCPEEVMRRVQQLM 359

Query: 350 GVH-LLEGYGLTECSPL--VTGNPYDLTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGE 406
            +  +L GYG TECSPL  +T     +      +G  +P TEV+IVD+ G V+P +Q GE
Sbjct: 360 YMQEVLIGYGQTECSPLNHITEIDSPVEKRVLTVGRALPHTEVKIVDEFGEVLPINQPGE 419

Query: 407 LQVRGPQVMQGYWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNV 466
           +  RG  +MQ YW  PE T   ++ EGWL +GDI + D+QG + IV R KDMI+  G N+
Sbjct: 420 VCSRGYCIMQCYWNDPEKTAATIDREGWLHSGDIGQMDEQGYVQIVGRIKDMIIRGGENI 479

Query: 467 YPNEIEDVVALHGKVLEVAAIGQANDVSGELVKIYVVKRDPSLTKDEVIAH-CRKHLTGY 525
           YP EIE+ +  H  V + A  G  +D  GE V  ++  R  +  K+E I H   +    +
Sbjct: 480 YPREIEEKLYTHKDVQDAAVFGVHSDKYGEEVCAWIKVRSGATIKEEDIRHFLTEKFAYF 539

Query: 526 KVPKLVEFRDDLPKTNVGKILRRVLRE 552
           KVP+ ++F D  P T  GKI +  +RE
Sbjct: 540 KVPRYIKFVDQYPMTVTGKIQKFKMRE 566