Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., AMP-binding domain protein (RefSeq) from Shewanella sp. ANA-3

 Score =  221 bits (563), Expect = 6e-62
 Identities = 153/543 (28%), Positives = 262/543 (48%), Gaps = 17/543 (3%)

Query: 23  PSLVEMFEQSVHKYADQPAFM---NMGAVMTFRKLEERSRAFAAYLQN------DLKLKK 73
           P+  E+ E+++ +Y +  A +    +  V+  + +    R + A +         L +  
Sbjct: 24  PNSPELVEKTIGQYLNDIANVYPEQLAVVVNHQDIRWNYRQYLAQIDALATGLLKLGIGP 83

Query: 74  GDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARAIVIVSNFAN 133
           GDRV +  PN +++ +  F   + G I V +NP Y P EL++ L +   RA++    F +
Sbjct: 84  GDRVGIWSPNNIEWCLTQFATAKIGAIMVCINPAYRPEELQYALTNVGCRAVICADKFKS 143

Query: 134 TLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLPGAISMRKALHKG 193
           +    +       + + + GQ+  +A   +  FV++      P       + +       
Sbjct: 144 SNYLQMLYELAPELKVCAAGQLQAKALPDL-QFVIRMGAEQSPGMLNFDDLLVEVTADDK 202

Query: 194 RRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYGPVLQEGRELV 253
             L+ +   +S  D   +Q+T GTTG  KGA L+H N++ N      A     ++    +
Sbjct: 203 AALERIAESLSPYDAINIQFTSGTTGSPKGATLSHHNILNNGYLVAEAMKFTCEDK---L 259

Query: 254 VTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQKYPFTAITGVNTLFNAL 313
              +PLYH F + +  L+ +  G   +   +  D    ++ +++   TA+ GV T+F A 
Sbjct: 260 CIPVPLYHCFGMVLGNLVCLAKGAAAVFPGDSFDPLTTLEVVERERCTALHGVPTMFIAE 319

Query: 314 VNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVH-LLEGYGLTECSPL--VTGNP 370
           + + +F   D  +++  V  G      V  R +    +  +L GYG TECSPL  +T   
Sbjct: 320 LEHPEFKRFDLSSLRTGVMAGATCPEEVMRRVQNLMYMQEVLIGYGQTECSPLNHITEID 379

Query: 371 YDLTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQGYWQRPEATKEVLN 430
             +      +G  +P TEV+IVD+ G V+P +  GE+  RG  +MQ YW  PE T   ++
Sbjct: 380 SPVEKRVLTVGRALPHTEVKIVDEFGEVLPINTPGEVCSRGYCIMQCYWNDPEKTAATID 439

Query: 431 AEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVALHGKVLEVAAIGQA 490
           +EGWL +GDI + D+QG + IV R KDMI+  G N+YP EIE+ +  H  V + A  G  
Sbjct: 440 SEGWLHSGDIGQMDEQGYVQIVGRIKDMIIRGGENIYPREIEEKLYTHKDVQDAAVFGVH 499

Query: 491 NDVSGELVKIYVVKRDPSLTKDEVIAH-CRKHLTGYKVPKLVEFRDDLPKTNVGKILRRV 549
           +D  GE V  ++  R  +   +E I H   +    +KVP+ ++F +  P T  GKI +  
Sbjct: 500 SDKYGEEVCAWIKIRSGATISEEDIRHFLTEKFAYFKVPRYIKFVEQYPMTVTGKIQKFK 559

Query: 550 LRE 552
           +RE
Sbjct: 560 MRE 562