Pairwise Alignments

Query, 381 a.a., ribonuclease D from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., ribonuclease D (RefSeq) from Shewanella loihica PV-4

 Score =  267 bits (683), Expect = 3e-76
 Identities = 155/365 (42%), Positives = 216/365 (59%), Gaps = 16/365 (4%)

Query: 9   VNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL 68
           + +Q +     L  +    R A V+MLDTEFVRTRT++ +LGLIQ++DGE L+LIDP  +
Sbjct: 1   MTFQYVEDDASLTELVDKYRQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAV 60

Query: 69  DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
            +++ F  LL+   ++ VLH+C EDLEV      C P  + D+QI AAF G+G   G+A 
Sbjct: 61  SDLSAFWALLERDDMISVLHSCSEDLEVLARYGRCQPKVLFDSQIAAAFCGWGHGMGYAK 120

Query: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAAL 188
           LV+  L V+LDK ESRTDW+ RPLSD QL+YAA DV YL  +Y +L+E++ ++G     L
Sbjct: 121 LVEHCLGVQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGRMPWLL 180

Query: 189 QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK 248
           +E E     R +  + + AYL +K A+QL PK+LA LK LA WR  +A++RDLAL FVIK
Sbjct: 181 EEGERMTQGRLESPDGDTAYLKVKNAFQLSPKQLAYLKVLAKWRLQKALDRDLALGFVIK 240

Query: 249 ETDLLTISRLALRSPK------RMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPPEI 302
           +  LL    LA + PK      RM E  +     R H+  IIA +  A     D  P  I
Sbjct: 241 DHALLA---LAKKQPKSTGEIFRMTE--LTEQEKRLHAKAIIAEMAKA---DLDNLPEAI 292

Query: 303 VPIMEYPGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDL 362
             I   PGYK  FK +K  +  V+ T  +  E L SK+ +++ L W W   +    +P +
Sbjct: 293 DVIALKPGYKSAFKAIKQALTQVAETHQVPMELLGSKRHIHEYLQWRWNDGQ--GEMPLV 350

Query: 363 MQGWR 367
           +QGWR
Sbjct: 351 LQGWR 355