Pairwise Alignments

Query, 381 a.a., ribonuclease D from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., ribonuclease D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  252 bits (644), Expect = 1e-71
 Identities = 143/373 (38%), Positives = 212/373 (56%), Gaps = 14/373 (3%)

Query: 11  YQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDE 70
           +Q +S    L  +    + + +++LDTEFVRTRT++ +LGLIQ +DG+ L+LIDP  L +
Sbjct: 2   FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIALPD 61

Query: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAALV 130
           ++ F  LL + +++K++H+C EDLEVF +     P P+ D+QI A+  G G   G+A LV
Sbjct: 62  LSAFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYAKLV 121

Query: 131 QDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQE 190
           +  L   +DK ESRTDW+ RPL+D QL YAA DV YL  +Y +L E++      D   +E
Sbjct: 122 ETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDRLDWLYEE 181

Query: 191 SELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIKET 250
            E     R    + E AYL +K A+QL   +LA LK LA WR  +A+ RDLAL FVIK+ 
Sbjct: 182 GERMTEGRLASPDAETAYLKVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKDH 241

Query: 251 DLLTISRLALRSPKRMEE----EGVDPHAIRRHSSKIIAMVKTALETPADAYPPEIVPIM 306
            L+    LA + PK M +      +     R H   I+ +++TA      + PPE+V ++
Sbjct: 242 GLIA---LAKKQPKSMSDLLKLNDLTEQEKRIHGKDILRVMQTA----DLSNPPELVDVL 294

Query: 307 EY-PGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQG 365
              PGYK  FK +K  +  +     +  E L SK+ +++ L W W  D+    LP ++ G
Sbjct: 295 ALKPGYKSAFKTIKTSLTELCEQHAILMEMLGSKRHIHEYLQWRW--DKQQGELPTVLSG 352

Query: 366 WRLPLLGEKLNTL 378
           WR  +  E L  L
Sbjct: 353 WRGEIAAESLAKL 365