Pairwise Alignments

Query, 183 a.a., rhombosortase from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., conserved protein, with rhomboid family domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 23/154 (14%)

Query: 36  GQWWRILTGNFAHTNFAHWAMNLAA-----LWIISFVFKPTARQLLIPLLLISLAVGVMI 90
           G WWR +T NF H    H  MN+ A     +W+   +     R++ +  LL  L   V  
Sbjct: 201 GDWWRAVTCNFVHIGAFHLLMNMYAFIYIGIWLEHLI---GTRRMFVSYLLTGLCSAVFS 257

Query: 91  LASDMQSY-VGLSGTLHGLF----AYYALNEALNGRRSSWLLVLGVIGKVAWEQWFGASA 145
           L    ++   G SG++ GL+    A+   +     +R +  L+  ++  V +   +G   
Sbjct: 258 LYMHAETISTGASGSIFGLYGIFLAFLLFHRIERSQRKA--LLTSILIFVGYNLIYG--- 312

Query: 146 STAELIGARVATEAHLAGLVGGLLLAAGHCFLQR 179
                I A V   AH+ GL+ G LL   + F +R
Sbjct: 313 -----IRAGVDNAAHIGGLLSGFLLGFIYVFGER 341