Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  181 bits (460), Expect = 6e-50
 Identities = 132/463 (28%), Positives = 223/463 (48%), Gaps = 25/463 (5%)

Query: 222 ATQIKAIEQAIGFQKQANSEMFSTGRFTISAGEEWKNASYEEVFSQLNSQHEQAMMAVIE 281
           AT ++  E+A G Q +     + +G   +   +  K  +YE   +QLNS   ++   V  
Sbjct: 133 ATPLEDDERAAGDQLELMLPAYISGSQQVV--DLMKAGNYEAARTQLNSLSSESFTKV-- 188

Query: 282 SYRNYRQIYQEYTVTSLALLDFIAELEELADSKVEQQAVLILDGQAWAISSFKVLIIIAL 341
             R+Y ++                 + +  + ++++ A    D +A ++   ++ ++IA 
Sbjct: 189 --RSYMRV-----------------MIDSNNRQIKEGAAAAADLKASSVLMLEIGVVIAF 229

Query: 342 LVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDEFGELGKSFDKFIEK 401
           LV ++LG ++   I  P+         I+   GDLT  +  T+ DE G+L  +       
Sbjct: 230 LVAIMLGVLITRMITRPLAVAVASAQRIA--GGDLTQPIVSTSGDEAGQLLNALSDMQGG 287

Query: 402 IQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTAMTAISSQVISG 461
           ++N I  I  +++   +AA +LSA    +   + +Q  E+   + A   MTA   +V   
Sbjct: 288 LKNTIQQIASASDQLASAAEELSAVTDESTRGLTRQNDEIQQAATAVNQMTAAVEEVARN 347

Query: 462 AREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIEPVLADI 521
           A   S++  +   +A      V    + +  +V E+T  T  ++ L  HV  I  VL  I
Sbjct: 348 AVSTSEASKSATDDAVDGRGQVDHTVKGITTMVHEITASTGAVSELAGHVREISKVLDVI 407

Query: 522 NGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSITQLRSSA 581
             IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ ST  I+  I+ ++S A
Sbjct: 408 RSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQASTVEIEGMISTVQSGA 467

Query: 582 DESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQSVTSIA 641
           D +V  +  S+   T T E+  +A  +L ++ + ++ + + N   + A   Q Q    + 
Sbjct: 468 DGAVAAMGKSLSLATNTQELALRAGAALEKITLGVATINERNLVIASASEEQAQVAREVD 527

Query: 642 SSLSHLQALCQSAQEKIQQSEHTISALKLKQEDLALKMSKFKI 684
            +L ++Q L   +     Q+  +   L          ++ FK+
Sbjct: 528 RNLINIQDLSTQSAAGANQTSASSQELSRLATSFNSLVANFKL 570