Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  190 bits (482), Expect = 2e-52
 Identities = 118/369 (31%), Positives = 191/369 (51%), Gaps = 3/369 (0%)

Query: 316 EQQAVLILDGQAWAISSFKVLIIIALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGD 375
           E +   +LD  A  I    +LI +A +VL      + + +  PI  +     DI EG GD
Sbjct: 271 EAEVFALLDEAALKILFSTLLIALAFVVL---SGFVASSVSKPIAAVARMFRDIGEGEGD 327

Query: 376 LTLRVNITTQDEFGELGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVN 435
           L  R+ +  +DE  +L   F+ FI KIQ+ + ++ Q++     +A+D+S   + T E   
Sbjct: 328 LRQRLPVQGEDELAQLASGFNSFISKIQDSVIEVAQTSEQLGKSAIDVSRQAQQTLEDSQ 387

Query: 436 KQTFEVNTISNATTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVA 495
            Q      +  A   M A  +++ + A + +++  + D+ + S    V QA  ++N+L  
Sbjct: 388 DQKDRTMQVVTAINEMGATVNEIAANAAQAAEAAKDADRASGSGQKVVTQARDTINQLSK 447

Query: 496 EVTQGTETINSLKNHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 555
           +V+Q  E I SL  H  SI  +L  I  I+EQTNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 448 DVSQVGEVIESLATHTKSIGSILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADE 507

Query: 556 VRSLATRTQGSTNTIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIE 615
           VR+LA+RT  ST+ +Q  I +L+S +  +V  ++ S  +  +      +A  +L  ++ +
Sbjct: 508 VRNLASRTAASTDEVQVMIDKLQSESARAVNAMSQSRSRSQEGVSAVDEASNTLSGISDQ 567

Query: 616 ISRLTQMNQQTSEAITHQEQSVTSIASSLSHLQALCQSAQEKIQQSEHTISALKLKQEDL 675
           I  ++ MN Q + A   Q   V  I  +++ +  + Q      Q +      L      L
Sbjct: 568 IGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTAATAQAAARASKDLNALATRL 627

Query: 676 ALKMSKFKI 684
              +++FK+
Sbjct: 628 DQLVARFKV 636



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 50/323 (15%), Positives = 119/323 (36%), Gaps = 26/323 (8%)

Query: 362 LQERVTDISEGNGDLTLRVNITTQDEFG--ELGKSFDKFIEKIQNL-------------I 406
           +Q+R+   +E NGD+ L +N    +  G   L KS D  ++++ +               
Sbjct: 147 VQQRLNVFTEANGDVKLFINYQQLNGRGLAGLAKSLDAMVQRLTSFKLEESGFVYLVDAK 206

Query: 407 ADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTAMTAISSQVISGAREIS 466
            ++   ++  K     L++ +  +   +++  F    +      M   SS + S    + 
Sbjct: 207 GEVQLHSDPGKIRKATLNSLYGKSGSLLSRADFNYMEVEVDGQPMMVASSYLPSIDWYLV 266

Query: 467 QSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIEPVLADI-NGIA 525
             V   +  A    + ++    ++   +A V       +S+   + ++  +  DI  G  
Sbjct: 267 AQVPEAEVFALLDEAALKILFSTLLIALAFVVLSGFVASSVSKPIAAVARMFRDIGEGEG 326

Query: 526 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSITQLRSSADESV 585
           +    L +    E A+          +A    S  ++ Q S   + Q+  QL  SA +  
Sbjct: 327 DLRQRLPVQGEDELAQ----------LASGFNSFISKIQDSVIEVAQTSEQLGKSAIDVS 376

Query: 586 RVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQSVTSIASSLS 645
           R    ++       + T Q   +++++   ++ +     Q +EA    +++  S    ++
Sbjct: 377 RQAQQTLEDSQDQKDRTMQVVTAINEMGATVNEIAANAAQAAEAAKDADRASGSGQKVVT 436

Query: 646 HLQALCQSAQEKIQQSEHTISAL 668
             +       + + Q    I +L
Sbjct: 437 QARDTINQLSKDVSQVGEVIESL 459