Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (488), Expect = 4e-53
 Identities = 177/687 (25%), Positives = 314/687 (45%), Gaps = 31/687 (4%)

Query: 14  MRVKTKILVTFSVVGILVTALGIWTIKT---MYSSSSGLSYIVGPAWDTADGAMETTIQI 70
           + V T+++  FSVV +L+  LG+ ++ T   + SS+  L  +  PA  +++G  +     
Sbjct: 3   LNVATRVIGGFSVVTLLLIVLGVASLVTNDNIKSSTLVLQDLSLPALKSSNGLTQNLALQ 62

Query: 71  EAQMLAVNRLILGEDSQRVEQILNTA----ITDVDTSSSRMIEAGLLSAAQTQQFSQFNS 126
           E Q+L        ++  +V     +     IT++D   +R+I+    +     Q     +
Sbjct: 63  EKQLLVAFHSKQSKELPQVRSQFTSLSKGFITELD-QLNRIIQGHEDNLGG--QIKSLRA 119

Query: 127 QYQQSRNTLITSYKNYIETKKSYDKATQVLVDFGEKLETLGDSAVEELEREPNRNITWQS 186
            YQ   +  +      ++ ++   +  + LVD  E LE   D     L      ++    
Sbjct: 120 NYQSFNDNSL----KMMQAREQSLQTQESLVDNLESLEGAADDTASLLL--DLIDLETSQ 173

Query: 187 DVMERWQAADGGMESNI--GLLWKLYYTQRLLDGQDDATQIKAIEQAIGFQKQANSEMFS 244
           D  ER  AA      N    L+   Y      +     T +K ++  I  + Q   E  S
Sbjct: 174 DPTEREIAATASNIDNSFSNLITSSYDLVNAKEKSKYETILKELDYIIS-EAQNKLEYVS 232

Query: 245 TGRFTISAGEEWKNASYE--EVFSQLNSQHE--QAMMAVIESYRNYRQIYQEYTVTSLAL 300
                +   E   N + E  +VF+ LN      +     ++      Q+       + A+
Sbjct: 233 RHWEGVIDQEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQLLNTVESNATAV 292

Query: 301 LDFIAELEELADSKVEQQAVLILDGQAWAISSFKVLIIIALLVLLLLGWILVNQILSPIQ 360
              +  L +  +S  +  +V  +D    A      L++IA++V +L+   ++  + + + 
Sbjct: 293 NQSMGSLNKAIESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLD 352

Query: 361 RLQERVTDISEGNGDLTLRVNITTQDEFGELGKSFDKFIEKIQNLIADITQSTNLAKTAA 420
           ++   +  ++ GN  LT +++ +  DEF EL ++ ++ ++ ++ LI  I   +N    AA
Sbjct: 353 KVNNALNILASGN--LTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAA 410

Query: 421 VDLSATFKVTAEAVNKQTFEVNTISNATTAMTAISSQVISGAREISQSVLNIDKNAQSTL 480
            + SA    T   + +Q  +V+ ++ ATT +++ + QV + A E    +   D+ AQ   
Sbjct: 411 EETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMR 470

Query: 481 SNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIEPVLADINGIAEQTNLLALNAAIEAA 540
           +   +  +++  L  EV +  + IN + +   SI  +L  I GIAEQTNLLALNAAIEAA
Sbjct: 471 AIADENKRTILALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAA 530

Query: 541 RAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSITQLRSSADESVRVINNSMLKGTQTTE 600
           RAGEQGRGFAVVADEVRSLA+RTQ ST  IQQ I  L+    E+V V+     +     E
Sbjct: 531 RAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVE 590

Query: 601 ITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQSVTSIASSLSHLQALCQ---SAQEK 657
            T QA  +L  ++  +          + A   Q      ++  L H+ A+ +   +  ++
Sbjct: 591 KTEQANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQ 650

Query: 658 IQQSEHTISALKLKQEDLALKMSKFKI 684
             QS H ++ L    E+L   + +FK+
Sbjct: 651 TAQSSHQVAQL---AEELQASVGEFKV 674