Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (487), Expect = 5e-53
 Identities = 110/349 (31%), Positives = 194/349 (55%), Gaps = 2/349 (0%)

Query: 336 LIIIALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDEFGELGKSF 395
           L+++A+  +++L  +   ++++PI  + + + DI++G GDLT R+++   DE   LG++F
Sbjct: 208 LVLVAITAVVML--VAAQRMVNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAF 265

Query: 396 DKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTAMTAIS 455
           ++F++K+Q +I D+ ++T   K+ A ++S+     A+ +     E + +  A T M+A +
Sbjct: 266 NQFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQQLISHNNETDQVVTAITEMSATA 325

Query: 456 SQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIE 515
           S+V     +++++     ++  +    V  +   V+ L+AE+      INSL      I 
Sbjct: 326 SEVAMSTTQVAEATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKIN 385

Query: 516 PVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSIT 575
            VL+ I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA+RTQ ST  I + ++
Sbjct: 386 SVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLS 445

Query: 576 QLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQ 635
           +L +    +V  + +S     ++   +    +SL  V   ++ +  M+ Q + A T Q  
Sbjct: 446 ELHNLVSLAVSSMESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSS 505

Query: 636 SVTSIASSLSHLQALCQSAQEKIQQSEHTISALKLKQEDLALKMSKFKI 684
               I  ++  +Q +     +    +  T   L  +  +L   + +FK+
Sbjct: 506 VTEEINRNVFAIQEIVNELLQASNSASDTSQGLANEGRNLDTLVGQFKV 554