Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  178 bits (452), Expect = 6e-49
 Identities = 110/334 (32%), Positives = 184/334 (55%), Gaps = 7/334 (2%)

Query: 329 AISSFKVLIIIALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDEF 388
           A+ S  ++++ A+ +LL + ++L   ILS    L+  VT++S+GNGDLT R+ I  +D+ 
Sbjct: 280 ALVSSAIMLLCAISILLGVLYLLYRPILS----LKAMVTELSKGNGDLTKRLEIHCEDDL 335

Query: 389 GELGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNAT 448
           G++    ++FI  +Q ++ ++ Q++     +   L+   +     ++  T E   I  A 
Sbjct: 336 GQISMGINQFIANLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAV 395

Query: 449 TAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLK 508
             M+A ++ V     E +      ++ A ++   V QA ++VN LV EV    + I  + 
Sbjct: 396 EEMSATANDVAQNGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQID 455

Query: 509 NHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTN 568
               +I  VL  I  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ ST 
Sbjct: 456 RDTINITQVLKVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTA 515

Query: 569 TIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSE 628
            I+++++ LR +++ ++  +  +     +T   T +    L  +   ++++  +N Q + 
Sbjct: 516 EIEETLSNLRDASNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIAT 575

Query: 629 AITHQEQSVTSIASSLSHLQALCQSAQEKIQQSE 662
           A   +EQS  S A    ++ A+C  A E  +  E
Sbjct: 576 AA--EEQSSVS-AEITRNMSAICDMANELARSGE 606