Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  186 bits (473), Expect = 2e-51
 Identities = 122/390 (31%), Positives = 200/390 (51%), Gaps = 4/390 (1%)

Query: 296 TSLALLDFIAELEELADSKVEQQAVL-ILDGQAWAISSFKVLIIIALLVLLLLGWILVNQ 354
           T L    +I  ++    ++V +  V  +L+  A+ I  + VLI  A + L       V+Q
Sbjct: 252 TLLVASSYIPSMDWYLVAQVPRAEVFALLEESAYQILVWTVLIAAAFIGLSTFVSASVSQ 311

Query: 355 ILSPIQRLQERVTDISEGNGDLTLRVNITTQDEFGELGKSFDKFIEKIQNLIADITQSTN 414
              PI ++ + + DI +G GDL  R+ +   DE  +L K F+ FIEKIQ+ I ++T ++ 
Sbjct: 312 ---PIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLAKGFNSFIEKIQHSIIEVTDTSV 368

Query: 415 LAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTAMTAISSQVISGAREISQSVLNIDK 474
               AA D++   + T +    Q  +   +  A   M A   ++   A + + +  + D 
Sbjct: 369 QLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMGATVHEIAGNAAQAADNAKDADN 428

Query: 475 NAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIEPVLADINGIAEQTNLLALN 534
            + +    V +A  ++N+L  +V Q    I SL  H TSI  +L  I  +++QTNLLALN
Sbjct: 429 ASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLALN 488

Query: 535 AAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSITQLRSSADESVRVINNSMLK 594
           AAIEAARAGE GRGFAVVA+EVR+LA+RT  ST+ +Q+ I  L+S A  +V  +  S  +
Sbjct: 489 AAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSKSR 548

Query: 595 GTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQSVTSIASSLSHLQALCQSA 654
             +  +   +A  +L +++ +I  +T MN Q + A   Q   V  I  +++ +  + Q  
Sbjct: 549 SQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEEQSTVVEDINRNVTEISEITQRT 608

Query: 655 QEKIQQSEHTISALKLKQEDLALKMSKFKI 684
            E  Q       +L      L   ++ FK+
Sbjct: 609 SETSQAVAQASQSLNQLAHRLDTLVAGFKV 638