Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  214 bits (546), Expect = 8e-60
 Identities = 131/406 (32%), Positives = 209/406 (51%), Gaps = 16/406 (3%)

Query: 281 ESYRNYRQIYQEYTVTSLALLDFIAELEELADSKVEQQAVLILDGQAWAISSFKVLII-- 338
           +SY  YR   Q+Y+  +  +LD   +                   QA +   FK+++I  
Sbjct: 243 KSYALYRHGMQDYSGKTFGVLDIALDRSH--------------SEQAMSDIRFKLIMIGF 288

Query: 339 IALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDEFGELGKSFDKF 398
           IA L+   + W +   I  PI      + DI+EG GDLT R+ + ++DE  +L  +F++F
Sbjct: 289 IAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQLALAFNRF 348

Query: 399 IEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTAMTAISSQV 458
            EKI   +A ++ ST+L  T+A ++SA    T +   +Q  E   ++ A   M A   +V
Sbjct: 349 AEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEV 408

Query: 459 ISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIEPVL 518
              A + + +  +  ++ +     V +   +++ L  E+    + IN L+ +   I+ VL
Sbjct: 409 AHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSVL 468

Query: 519 ADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSITQLR 578
             I  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA+RTQ ST+ IQQ I  L+
Sbjct: 469 VVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEALQ 528

Query: 579 SSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQSVT 638
            SA  +V  +N S         +  +A E+L  +   +S ++QMN Q + A   Q     
Sbjct: 529 HSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQCAVSA 588

Query: 639 SIASSLSHLQALCQSAQEKIQQSEHTISALKLKQEDLALKMSKFKI 684
            I  +++++  +  +A E   Q+      L      L   +++F+I
Sbjct: 589 EINKNVNNINDITINATESAVQTARAGDELAQLSMRLTTLLAQFRI 634