Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  188 bits (477), Expect = 8e-52
 Identities = 116/357 (32%), Positives = 189/357 (52%), Gaps = 4/357 (1%)

Query: 331 SSFKVLIIIALLVLLLLG---WILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDE 387
           SS  + I + L++ L+LG   ++++  I++P++R+ + ++ I E + DLTLR + +TQDE
Sbjct: 265 SSRNIGITVFLIIALILGIITYLIIRSIITPVERITQVISRI-EVSKDLTLRCDASTQDE 323

Query: 388 FGELGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNA 447
            GE+ + F+  +   Q LI  + +S     T++  +S    + +E V +Q  E + ++ A
Sbjct: 324 LGEIAQHFNSMVGSFQQLIEQVIESVATINTSSKSVSQNAMLASEGVAQQLNETDMVATA 383

Query: 448 TTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSL 507
            T M A   ++       +        NAQ   S V Q    + +L  ++      ++ L
Sbjct: 384 ITEMGATIDEIAKTTELAALKAGKTHDNAQLGQSEVEQTILKIRQLSEQINTSASVVDEL 443

Query: 508 KNHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGST 567
           +    +I  VL  I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA RTQ ST
Sbjct: 444 ERDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQSST 503

Query: 568 NTIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTS 627
             I   I  L+S     V++++ S  +G ++ E  + A E L  +  ++  +  M+ Q +
Sbjct: 504 QEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAAAGELLKLINNDVRNIMDMSTQIA 563

Query: 628 EAITHQEQSVTSIASSLSHLQALCQSAQEKIQQSEHTISALKLKQEDLALKMSKFKI 684
            AI  Q      +  ++  ++ + + +      +      L+ + E L   +S FKI
Sbjct: 564 AAIEEQSMVAAEVNKNVVVIRDIAEDSSRAADANASASDELRTRAEYLVSAVSHFKI 620