Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  195 bits (496), Expect = 5e-54
 Identities = 176/711 (24%), Positives = 324/711 (45%), Gaps = 80/711 (11%)

Query: 14  MRVKTKILVTFSVVGILVTALGIWTIKTMYS---SSSGLSYIVGPAWDTADGAMETTIQI 70
           + V T+++  FSVV +L+  LG  +  T  S   SS+ +  +  PA  + +   E+  + 
Sbjct: 3   VNVATRVIGGFSVVTLLLVLLGFTSYLTNISLKDSSAMMQQLSLPALKSTNHLTESLSEQ 62

Query: 71  EAQMLAVNRLILGEDSQRVEQILNTAITDVDTSSSRMIEAGLLSAAQTQQFSQFNSQYQQ 130
           + Q+L    +       R+   +     D        I    L   +    S   SQ   
Sbjct: 63  QRQVL----IAYHAPKSRLIPDIRKVFNDHSAQFKNEINNLTLLVQKQNNLSSLISQLSN 118

Query: 131 SRNTLITSYKNYIETKKSYDKATQVLVDFGEKLETLGDSA----VEELEREPNRNITWQS 186
           S +T        +  +++     + L+   +KLE   D A    ++ ++ E ++N   QS
Sbjct: 119 SFSTFERDSLAMLSEREAALSKQEQLISLKKKLENAADDASSVLLDIIDLENSQNPDAQS 178

Query: 187 DVMERWQAADGGMESNIGLLW---------------------------KLYYTQRLLDGQ 219
            +     A D GM + I  +                            KL Y  R  +G 
Sbjct: 179 -IAASASAIDTGMGNIITTIADLVSNDEMSKHELISKELDYILSETKNKLEYVNRHAEGI 237

Query: 220 DDATQIKAIEQAIGFQKQANSEMFSTGRFTISAGEEWKNASYEEVFSQLNSQHEQA---M 276
            DA  +++I Q +   K+  + +            E  ++  ++  +QLN  H QA    
Sbjct: 238 VDADTLESINQDV---KKVLTLL------------EGSDSMVQQKANQLN--HAQAASNQ 280

Query: 277 MAVIESYRNYRQIYQEYTVTSLALLDFIAELEELADSKVEQQAVLILDGQAWAISSFKVL 336
           +A+IE         ++  V    + +    +E +A +++ Q  +  +D  ++      ++
Sbjct: 281 LAIIE---------KDVKVIDRNMEEVSDNIEAVA-AQMSQATITQIDAASFRTM---IV 327

Query: 337 IIIALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDEFGELGKSFD 396
           ++IA++V +++ + +V  +   + ++   +  ++ GN  LT +++ ++QDEF EL K+ +
Sbjct: 328 VLIAIVVAIIISFAVVTPLKRSLNQVNNALNVLASGN--LTHKLDDSSQDEFAELAKNCN 385

Query: 397 KFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTAMTAISS 456
           + ++ ++ LIA I   +N    AA   SA    T   + +Q  +V+ ++ ATT +++ + 
Sbjct: 386 RLVDSLRGLIAGILDRSNQLAAAAEQTSAITAQTTTGIQEQKSQVDQVATATTELSSSAQ 445

Query: 457 QVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIEP 516
           QV   A +    +   D+ A+   +   +   ++  L  EV +  + IN + +   +I  
Sbjct: 446 QVSMSANDALAQIKQADQEAKHMRAIAEENKHTILALAEEVAKAGQVINKVHSDSAAIGS 505

Query: 517 VLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSITQ 576
           +L  I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA+RTQ ST  IQQ I  
Sbjct: 506 ILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQVSTREIQQMIEV 565

Query: 577 LRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQS 636
           L+  A ++V  ++    +     + T QA  +L  ++  + +        + A   Q   
Sbjct: 566 LQQGAQQAVAAMDMGRAQANACVQKTEQANLALETISQSVHKAYDAGTHIAHAAQEQNLV 625

Query: 637 VTSIASSLSHLQALCQS---AQEKIQQSEHTISALKLKQEDLALKMSKFKI 684
              ++  L H+ A+ +      ++  QS H ++ L    E+L   + +F++
Sbjct: 626 SQQVSEKLEHIAAISEETAIGADQTAQSSHQVAKL---AEELQASVGEFRV 673