Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  180 bits (456), Expect = 2e-49
 Identities = 125/367 (34%), Positives = 192/367 (52%), Gaps = 20/367 (5%)

Query: 327 AWAISSFKV-LIIIALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNIT-T 384
           AW +S+  V L++I  LVL+ +           ++R+   + DI+EG+GDLT+R++   +
Sbjct: 275 AWWMSAVGVGLLVIFGLVLVAI----FKMQFKDLERVALALNDIAEGDGDLTVRIHTANS 330

Query: 385 QDEFGELGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTI 444
            DE G L   F++F+E++  +I+ +       +  A   SA+    ++ +  Q  EV  +
Sbjct: 331 HDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMV 390

Query: 445 SNATTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETI 504
           + A T M + + ++ S A   +Q+  N    +      V Q+ QS+  L  EV      I
Sbjct: 391 ATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRII 450

Query: 505 NSLKNHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQ 564
           + L  H   I  +L  I+GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT 
Sbjct: 451 SELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTH 510

Query: 565 GSTNTIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQ 624
            ST  IQ  I  L+ +A ++V+ +  S      +    + A ESL Q++  I+ ++ M  
Sbjct: 511 SSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMAS 570

Query: 625 QTSEAITHQ-------EQSVTSIASSLSHLQALCQSAQEKIQQSEHTISALKLKQEDLAL 677
           Q + A   Q        ++  SI     +L    QSA  + Q+  H   A  L+QE    
Sbjct: 571 QIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSAMVQSQELAHL--AASLQQE---- 624

Query: 678 KMSKFKI 684
            +S+FK+
Sbjct: 625 -VSRFKL 630