Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  192 bits (487), Expect = 5e-53
 Identities = 110/333 (33%), Positives = 186/333 (55%), Gaps = 9/333 (2%)

Query: 337 IIIALLVLLLLG------WILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDEFGE 390
           ++I L+ L+L G       +  ++++ PI+ + + + DI++G GDLT R+++  +DE  +
Sbjct: 201 LMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQ 260

Query: 391 LGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTA 450
           LG++F+ F++K+Q++I D+  +T   KTAA  +    KV +  +     E + +  A T 
Sbjct: 261 LGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTAITE 320

Query: 451 MTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNH 510
           M++ +S+V     +++++      +  +    V  + + +  L+ ++     +I SL   
Sbjct: 321 MSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQINHAAGSIKSLSEQ 380

Query: 511 VTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTI 570
              I  VL+ I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA+RTQ ST  I
Sbjct: 381 SQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEI 440

Query: 571 QQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAI 630
            + ++ L     ++V+ ++ S     ++ E +    ESL  V   ++ +  M+ Q + A 
Sbjct: 441 NEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSVTSAVTAINDMSTQIATAA 500

Query: 631 THQEQSVTSIASSLSHLQALCQSAQEKIQQSEH 663
           T Q      I  ++  +Q +     E +  SEH
Sbjct: 501 TEQSSVTEEINRNVYAIQEI---VNELLHSSEH 530



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 511 VTSIEPVLADINGIAEQTNLLALNAAIEAA-RAGEQGRGFAVVAD-------EVRSLATR 562
           V  I+ +  ++N IA+    L    +++      + GR F +  D       +V S   +
Sbjct: 226 VVPIKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAK 285

Query: 563 TQGSTNTIQQSI----TQLRSSADESVRVINNSMLKGTQTTEITSQAEE---SLHQVAIE 615
            + + N I        +QL S  +E+ +V+       T  TE++S A E   +  QVA  
Sbjct: 286 VKTAANAIHDQTKVMSSQLLSHNNETDQVV-------TAITEMSSTASEVAQNTTQVAEA 338

Query: 616 ISRLTQMNQQTSEAITHQEQSVTSIASSLSHLQALCQSAQEKIQQSEHTISAL 668
               T         +    + + ++   ++H     +S  E+ Q+    +S +
Sbjct: 339 TQAATGDVANAQRCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVI 391