Pairwise Alignments

Query, 291 a.a., preprotein translocase subunit Tim44 from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., Uncharacterized protein conserved in bacteria from Pseudomonas stutzeri RCH2

 Score =  158 bits (400), Expect = 1e-43
 Identities = 112/294 (38%), Positives = 160/294 (54%), Gaps = 21/294 (7%)

Query: 1   MKRLFSLIALIMVSVAVTPIAEAKKFGGGKSFGN-NSYKTAPAPKQQQQKNDTVKNDAAN 59
           M+R+ S+   + +S+     A AK+FGGGKSFG+  S++T  AP+Q Q   +        
Sbjct: 1   MQRVLSIFMALCISLTFALDAHAKRFGGGKSFGSAPSHQTRQAPQQTQAAPNQAGRQTPA 60

Query: 60  PASSAKKGLMGGLLGGLLAGGLLAA-FFGGAFEGIQFMDILIMGLIAFVIFKLMRAFLAS 118
            AS A + L  G L GL AGGLLA+ F G  FEGIQFMDILI G+IAF++F+    FLA+
Sbjct: 61  AASGASRWL--GPLAGLAAGGLLASMFMGDGFEGIQFMDILIFGVIAFLLFR----FLAA 114

Query: 119 KQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP-QSMGGGFGSAAQSDVPHNYPAGFDRV 177
           +     + QQQPA +G      E P     +QP  S+ GG  +   +    N PA F+  
Sbjct: 115 R-----RRQQQPAMAGHAPMQREMP-----QQPATSIFGGSAAPVAAAPVINAPAWFNEQ 164

Query: 178 AFVNGAREHYRILQGAWNHNQLETIREYVSPSLFEDLKAERANY-EGDQHTDVMYVDAEI 236
           +FV  AREH+  LQ  W+ N+++ I E+V+P L   LK ERA   +  Q T +  +  ++
Sbjct: 165 SFVAAAREHFLSLQQHWDANEMDKISEFVTPQLLGFLKQERAEIGDAYQSTYIDDLQIQL 224

Query: 237 VRADYDANRAQLSLQFSGRYRDAVEGIEENIEDVWHLERDLTVPNAPWLIVGIQ 290
              D DA +   +L FSG  + +     E   + W +ER     N PWL+ GI+
Sbjct: 225 DGVDDDAEKTTATLTFSGVSKTSRFDQGEPFSESWRMER-AQGENQPWLVAGIR 277