Pairwise Alignments

Query, 291 a.a., preprotein translocase subunit Tim44 from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  282 bits (722), Expect = 5e-81
 Identities = 159/303 (52%), Positives = 209/303 (68%), Gaps = 26/303 (8%)

Query: 1   MKRLFSLIALIM-VSVAVTPIAEAKKFGGGKSFGNNSYKTAPAPKQQQQKNDTVKNDAAN 59
           MK+LF ++A+I  VS+A +P+AEAKKFG  KS G  S++TAPA  Q    N       A 
Sbjct: 1   MKKLFIMLAMIFAVSLAASPVAEAKKFGSNKSIGK-SHQTAPA--QPAATNTPTTPPTAA 57

Query: 60  PASSA-KKGLMGGLLGGLLAGGLLAAFF-GGAFEGIQFMDILIMGLIAFVIFKLMRAFLA 117
           PA +A KKG+MGG+LGGLLAGGLLAA F G  FE IQFMDILI+ L+AFV+FK++R  +A
Sbjct: 58  PAPAAGKKGMMGGMLGGLLAGGLLAALFMGEGFENIQFMDILIIALLAFVLFKIVRTVMA 117

Query: 118 SKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGGFGSAAQSD----------VP 167
           SK  +    Q +PAY+G       QPN  N ++ Q+   GF S+A S           VP
Sbjct: 118 SKASA----QPRPAYAGAG-----QPNP-NLQRQQAEQTGFASSANSGSNGFAQAASTVP 167

Query: 168 HNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYVSPSLFEDLKAERANYEGDQHT 227
            + PAGFD   F+ GAR HY+ LQ AWN N L  I+EYVS  L+ +L  +R    G+QHT
Sbjct: 168 FHLPAGFDLPGFLEGARSHYKTLQVAWNENDLSKIQEYVSIELYNELSNQRRELVGEQHT 227

Query: 228 DVMYVDAEIVRADYDANRAQLSLQFSGRYRDAVEGIEENIEDVWHLERDLTVPNAPWLIV 287
           +VM++DAE+VRA ++AN A++S++FSGRYRD VEG+EE+I+++WHLER+LT  NAPWLIV
Sbjct: 228 EVMFLDAELVRATHNANLAEVSVKFSGRYRDTVEGVEEDIKEIWHLERNLTQANAPWLIV 287

Query: 288 GIQ 290
           GI+
Sbjct: 288 GIE 290