Pairwise Alignments

Query, 323 a.a., lytic murein transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., lytic murein transglycosylase B (RefSeq) from Shewanella loihica PV-4

 Score =  122 bits (306), Expect = 1e-32
 Identities = 90/316 (28%), Positives = 151/316 (47%), Gaps = 24/316 (7%)

Query: 17  VLANEVSFEQYVERLKQQAREEGISERILNEAFRDVEYKPRSVVADKNQPEKKLTLDEYI 76
           V+  E    +      +Q    G ++  ++      +Y  + + A     E K    +Y 
Sbjct: 26  VIPQEGDISELKTAFTEQQLGAGFTQAEIDSFLSSAQYNQKVIDAITTPWEAKPWF-QYH 84

Query: 77  PRAVPEWKVKQAQSLYEKHYTELQRIGKQYGVQPRFIVALWGVESNFGAFTGNFRVIDAL 136
           P  + + ++++  + +  H   + +  K Y V P  IVA+ G+E+ +G + G + VIDAL
Sbjct: 85  PIFLTDKRLEKGLNFWRTHDATIAKAAKTYQVDPEIIVAIIGIETFYGGYMGTYPVIDAL 144

Query: 137 STLAYEGR-REEFFRKETMAALQILEQGHIAPEAMKGSWAGAMGQCQFMPSSFLNFAADG 195
            TL +    R +FFRKE      + ++  +    +KGS+AGAMG  QF+PSS+ +FA D 
Sbjct: 145 YTLGFHYTPRADFFRKELAQLQTLAKEEKLDLTTLKGSYAGAMGYGQFIPSSYRHFAVDF 204

Query: 196 NGDGKKDIWGTRSDVFASTANYLSQSGWDDKYTWGRQVKIPKGFDHALEGRQPEKGKTLQ 255
           +GDG++D+ G   D   S ANY  Q GW      G  V +P    H            L+
Sbjct: 205 SGDGRRDLVGDPVDAIGSVANYFHQHGWQK----GGLVTLPLTTHHL--------PAHLK 252

Query: 256 EWS--KLGVTRYD-GKPLPALSDDI------KAWLIMPDDEAGRIY-LVYNNYNVLMKWN 305
            WS  KL     D   P  +L+ ++       A L+  + + G+ Y L  NN+ V+ ++N
Sbjct: 253 AWSGEKLSYKVADILSPTISLAQNVDLDVQQPALLVELEQQDGKDYWLGLNNFYVITRYN 312

Query: 306 RSHYFALAVSHLADRI 321
           RS  +A+AV   + ++
Sbjct: 313 RSPLYAMAVYQFSQQL 328