Pairwise Alignments

Query, 323 a.a., lytic murein transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., putative transglycosylase (RefSeq) from Shewanella loihica PV-4

 Score =  226 bits (576), Expect = 6e-64
 Identities = 129/327 (39%), Positives = 195/327 (59%), Gaps = 15/327 (4%)

Query: 4   LLSIVL--GLALSAPVLANE--VSFEQYVERLKQQAREEGISERILNEAFRDVEYKPRSV 59
           LLS +L  GL L++P+ A E  +S++QY+  LKQQA E+GI++  ++  F  ++   +++
Sbjct: 7   LLSALLANGLLLTSPLQAQESALSYDQYLSELKQQAVEQGIAQGTIDAVFDQIKLFKKAM 66

Query: 60  VADK--NQPEK-KLTLDEYIPRAVPEWKVKQAQSLYEKHYTELQRIGKQYGVQPRFIVAL 116
           V +   N P+     LD Y+P  V E  V+QA+ LY  +     R+GK+YGVQPRFI+A 
Sbjct: 67  VNEPAANGPQNGPQNLDTYLPERVSEALVEQARGLYRDNKALFDRLGKEYGVQPRFILAY 126

Query: 117 WGVESNFGAFTGNFRVIDALSTLAYEGRREEFFRKETMAALQILEQGHIAPEAMKGSWAG 176
           WG+ S F A   ++  +  +++ AY    ++      +AAL+++E+  ++ +++K   +G
Sbjct: 127 WGIASAFDA--SDYPALTVIASNAYHSDGQD---AAFLAALKLMERDQLSFDSLKSDASG 181

Query: 177 AMGQCQFMPSSFLNFAADGNGDGKKDIWGTRSDVFASTANYLSQSGWDDKYTWGRQVKIP 236
            MG   F P     +  DGNGDGK DIW   +D FA+TANYL Q GWD   TWGRQVK P
Sbjct: 182 LMGYPHFTPKQLAKYGKDGNGDGKVDIWQNLADAFATTANYLKQLGWDYDGTWGRQVKSP 241

Query: 237 KGFDHALEGRQPEKGKTLQEWSKLGVTRYDGKPLPALSDDIKAWLIMPDDEAGRIYLVYN 296
                 L G +  KG    +W  LGV R++G  LP+   D++  LI PD + GR YLVY+
Sbjct: 242 SELPKDLVGLEVHKG--FDQWQALGVRRFNGSDLPS-RKDMQVSLIRPDGKGGRSYLVYD 298

Query: 297 NYNVLMKWNRSHYFALAVSHLADRIAF 323
           NY VL +   S +  LAV++L++RI +
Sbjct: 299 NYRVLRQTQASDHLTLAVTYLSERIKY 325