Pairwise Alignments

Query, 323 a.a., lytic murein transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., membrane-bound lytic transglycosylase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (306), Expect = 1e-32
 Identities = 92/328 (28%), Positives = 163/328 (49%), Gaps = 28/328 (8%)

Query: 5   LSIVLGLALSAPVLANEVSFEQYVERLKQQAREEGISERILNEAFRDVEYKPRSVVADKN 64
           +S+ +      PVL   +  E    ++ Q     G ++  +       +Y  ++V+   +
Sbjct: 36  ISVAVTTPAPTPVLPEALKAEFIKTQMAQ-----GFTKAEVETFLAKAKYN-QAVIDAIS 89

Query: 65  QPEKKLTLDEYIPRAVPEWKVKQAQSLYEKHYTELQRIGKQYGVQPRFIVALWGVESNFG 124
           +P +     +Y P  + E ++    + ++KH   + +    Y V+P+ IVA+ G+E+ +G
Sbjct: 90  RPWEAKPWHKYYPIFLTEKRLDAGLAFWKKHEKAIAKAASNYQVEPQIIVAIIGIETFYG 149

Query: 125 AFTGNFRVIDALSTLA-YEGRREEFFRKETMAALQILEQGHIAPEAMKGSWAGAMGQCQF 183
            +TGN+ VIDAL TL  Y   R  FFRKE    ++++++ H+  +++KGS+AGAMG  QF
Sbjct: 150 QYTGNYPVIDALYTLGFYYEPRATFFRKEFGELMKLVKEEHLDIDSLKGSYAGAMGFGQF 209

Query: 184 MPSSFLNFAADGNGDGKKDIWGTRSDVFASTANYLSQSGWDDKYTWGRQVKIPKGFDHAL 243
           +PSS+ ++A D +G G +D+  +  D   S ANY  + GW        Q+  P       
Sbjct: 210 IPSSYRHYAVDFDGSGNRDLLKSPDDAIGSVANYFHEHGW--------QLNAPVALPLVN 261

Query: 244 EGRQPEKGKTLQEWS--KLGVTRYD-GKPLPALSD--DI----KAWLIMPDDEAGRIY-L 293
                 K K    W+  KL     D   P  +L++  D+    KA LI  +    + Y L
Sbjct: 262 RSANAPKAKV---WAGEKLHYKVSDILSPTLSLTNARDVDASQKAMLIELEQVGSKDYWL 318

Query: 294 VYNNYNVLMKWNRSHYFALAVSHLADRI 321
             NN+ V+ ++NRS  +++AV   + ++
Sbjct: 319 GLNNFYVITRYNRSPLYSMAVYQFSQQL 346