Pairwise Alignments

Query, 323 a.a., lytic murein transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., lytic murein transglycosylase B (RefSeq) from Shewanella sp. ANA-3

 Score =  124 bits (310), Expect = 4e-33
 Identities = 82/272 (30%), Positives = 138/272 (50%), Gaps = 14/272 (5%)

Query: 57  RSVVADKNQPEKKLTLDEYIPRAVPEWKVKQAQSLYEKHYTELQRIGKQYGVQPRFIVAL 116
           ++V+   ++P +     +Y P  + E ++    + ++KH   + +   +Y V+P+ IVA+
Sbjct: 82  QAVIDAISRPWEAKPWHQYYPIFLTEKRLNAGLAFWKKHEATIAKAATKYQVEPQIIVAI 141

Query: 117 WGVESNFGAFTGNFRVIDALSTLA-YEGRREEFFRKETMAALQILEQGHIAPEAMKGSWA 175
            G+E+ +G +TGN+ VIDAL TL  Y   R  FFRKE    ++++++ H+   ++KGS+A
Sbjct: 142 IGIETFYGQYTGNYPVIDALYTLGFYYEPRATFFRKEFGELMKLVKEEHLDINSLKGSYA 201

Query: 176 GAMGQCQFMPSSFLNFAADGNGDGKKDIWGTRSDVFASTANYLSQSGWD-----DKYTWG 230
           GAMG  QF+PSS+ ++A D +G G +D+  +  D   S ANY  + GW            
Sbjct: 202 GAMGFGQFIPSSYRHYAVDFDGSGNRDLLQSPEDAIGSVANYFHEHGWQLHAPVALPLVN 261

Query: 231 RQVKIPKGFDHALEGRQPEKGKTLQEWSKLGVTRYDGKPLPALSDDIKAWLIMPDDEAGR 290
                PK    A E  Q +    L     L   R        L    KA LI  +    +
Sbjct: 262 SSANAPKAKVWAGEKLQYKVSDILSPSLSLATAR-------DLDASQKAMLIELEQVGSK 314

Query: 291 IY-LVYNNYNVLMKWNRSHYFALAVSHLADRI 321
            Y L  NN+ V+ ++NRS  +++AV   + ++
Sbjct: 315 DYWLGLNNFYVITRYNRSPLYSMAVYQFSQQL 346