Pairwise Alignments

Query, 315 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  167 bits (423), Expect = 3e-46
 Identities = 93/304 (30%), Positives = 164/304 (53%), Gaps = 5/304 (1%)

Query: 1   MFAERASQMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTL 60
           M  +R   M  F  ++Q  SFT AA  LG+S   VSK ++ LE  L V+L+ RTTR   +
Sbjct: 1   MALDRIDTMKAFTAVVQEGSFTKAADRLGLSSQLVSKYVSQLEEHLKVRLLNRTTRRVNV 60

Query: 61  TDAGNLFYAQCRELLTIVTNAQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQY 120
           T+AG  ++ +C+++L  +    + + +  +   GL+++    SFG  H+  AL Q +QQ+
Sbjct: 61  TEAGRAYFERCQQVLIDIEEMDNALTNLSETASGLLKVSAPMSFGIHHLPSALVQFQQQH 120

Query: 121 PELNVEVHLFDHKVDMLKEGLDLWITSNEQLPEGYVAQRIADCRFVVAASPDYLLRYGSP 180
           P++ +++ L D KVD+L++G+D+ +   +      +A+++   + VV ASP+YL   G P
Sbjct: 121 PDVRLDITLTDKKVDLLEDGVDVALRIGQLTSSSLIAKKLTPIKLVVCASPEYLAERGEP 180

Query: 181 TEPMALMEHNCLIYRSWERDYTRWSFSRDG-HNQTIKVAGNYSVDLAEAVRDAAVAGWGI 239
             P  L+ HN   Y  +       +F R G H   +K+  + + +  + + +AA+AG GI
Sbjct: 181 KTPADLIHHN---YLHFSYSDLGAAFGRFGEHFSALKIPSDLACNNGDMLVEAAIAGRGI 237

Query: 240 AYLATYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRLGTP 299
               T+L+    R+G+L  +L +++  +    YAVY  R+ +  K    ++ + Q  G  
Sbjct: 238 VVQPTFLVSKALRSGKLKAILTDYTP-EPFGLYAVYVHRKFLASKVRCFVDALSQYYGKT 296

Query: 300 CYWD 303
            YWD
Sbjct: 297 PYWD 300