Pairwise Alignments

Query, 315 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (410), Expect = 9e-45
 Identities = 88/285 (30%), Positives = 156/285 (54%), Gaps = 6/285 (2%)

Query: 12  FAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLFYAQC 71
           F  + + +SFT AA  LG+S + VS+Q++ALE  +  KL  RTTR  ++++ G ++Y  C
Sbjct: 10  FVAVAEAESFTKAAKQLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEVGRIYYQHC 69

Query: 72  RELLTIVTNAQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEVHLFD 131
           R++L  +  A+  + + +    GL+++    ++G   ++P +     +YPEL V+++L +
Sbjct: 70  RQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLVPLVNDFIAKYPELEVKINLTN 129

Query: 132 HKVDMLKEGLDLWITSNEQLPEGYVAQRIADCRFVVAASPDYLLRYGSPTEPMALMEHNC 191
            KVD++ +G DL I   +      +A+R+      V ASPDY+  +G P     L +HNC
Sbjct: 130 QKVDLIDDGYDLAIRLGQLKDSSIMAKRLGSRTQYVCASPDYVSTFGIPHSLSELEQHNC 189

Query: 192 LIYRSWERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLATYLLRDEF 251
           L+      DY  W F  +G  + ++V GN + +   A+ DAA+ G GI  L  Y +    
Sbjct: 190 LL---GTLDY--WRFQENGKTRNVRVKGNLTCNSGYALVDAAIKGIGIIQLPEYYVLPFL 244

Query: 252 RTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296
             GQL+ LL E +   +   +A+YP  +H+  K   +++++ + L
Sbjct: 245 EDGQLVPLL-EQNRQPKEGIWALYPHNRHLSPKVRMLLDYLSEAL 288