Pairwise Alignments

Query, 405 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  350 bits (899), Expect = e-101
 Identities = 196/404 (48%), Positives = 269/404 (66%), Gaps = 7/404 (1%)

Query: 4   VMSSLLGMGAILLVAWLFSTNRKNINLRTVSLALLLQIFFALLVLYVPAGKEALNRVTGA 63
           ++ S+LG+  +L V  LFS NR  I+ R V  A  + I  A  VL    G + L  V+  
Sbjct: 1   MIQSILGIFVLLGVGLLFSDNRSLISWRAVIGAFGIIIALAFFVLATEIGADVLLAVSNT 60

Query: 64  VSQLINYGQDGIGFVFGGLANGSV---GFVFAINVLGIIIFFSALISGLYHLGIMPKVIN 120
           V ++  YG +GI F FG L N SV   GFV+A+ VL  IIF +AL S LY+LGIM   + 
Sbjct: 61  VGKVFGYGTEGIKFAFGSLVNFSVEGIGFVWALQVLPQIIFTAALTSLLYYLGIMQWFVL 120

Query: 121 LIGGGLQKLLGTGRAESLSATANIFVGMIEAPLVVKPYLHKMTDSQFFAVMTGGLASVAG 180
           +IGG LQK+LGT RAES++A  NI +G  EAPL++KPY   +T +Q FAVM GGL+S+AG
Sbjct: 121 IIGGSLQKVLGTSRAESMNAAGNIILGQTEAPLLIKPYHRVLTRAQIFAVMVGGLSSIAG 180

Query: 181 GTLVGYASLGVELNYLIAAAFMSAPAGLLMAKIMLPETEHVDAAIAQDELDLPKSTNVVE 240
             L G A +GV LNYLI A FMSAPAGL+ AK+++PETE     + +   D  K ++ ++
Sbjct: 181 SILAGLAGMGVALNYLIMACFMSAPAGLMFAKLLIPETEPTVNEVPELP-DDEKPSSFID 239

Query: 241 AIADGAMSGVKIAVAVGATLLAFVSVIALLNGLLGWFGGWFGI-ELSFELIMGYVFAPVA 299
           AIA GA++G+ IA  VGA ++A + ++ALLNG LG  G  FG+  L+ ++I+G +FAPVA
Sbjct: 240 AIAKGAIAGMGIAAIVGAVIIACIGLMALLNGGLGAIGELFGMPTLTVDMILGTLFAPVA 299

Query: 300 WLIGIPWHEAITAGSLIGNKVVVNEFVAFIQLIEVKEQLSAHSQAIVTFALCGFANISTM 359
           WLIGIPW EA TAG+ +G K+ +NEFVAF  +  V  +LSA S AI+T ALCGFANI ++
Sbjct: 300 WLIGIPWVEASTAGAFLGQKIAMNEFVAFANMGNV--ELSARSNAIMTIALCGFANIGSV 357

Query: 360 AILIGGLGSLVPERRSFISQYGFRAIGAGVLANLMSASIAGVIL 403
           A++ G L  ++P+R   I Q G + + A  LANLM+A+I  + +
Sbjct: 358 AMVCGALSKMIPQRAGLIGQLGMKVLLAATLANLMNAAIVSLFI 401