Pairwise Alignments

Query, 405 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  412 bits (1060), Expect = e-120
 Identities = 214/421 (50%), Positives = 301/421 (71%), Gaps = 21/421 (4%)

Query: 4   VMSSLLGMGAILLVAWLFSTNRKNINLRTVSLALLLQIFFALLVLYVPAGKEALNRVTGA 63
           ++ SLLG+  +L VA+L S NR+ IN RTV LA LLQ+     V+Y   G+  +  +  A
Sbjct: 3   ILVSLLGIITLLAVAYLASENRRAINYRTVGLAFLLQLALGAFVMYSALGQSMIFSMAAA 62

Query: 64  VSQLINYGQDGIGFVFGGLAN-------GSVGFVFAINVLGIIIFFSALISGLYHLGIMP 116
           VS +I+Y  DG+ F+FGGL +       G+ GFV A  VL II+FFSAL + LY+LGIM 
Sbjct: 63  VSNVISYSNDGMSFMFGGLVSDKMYELFGAGGFVIAFKVLPIIVFFSALSAVLYYLGIMQ 122

Query: 117 KVINLIGGGLQKLLGTGRAESLSATANIFVGMIEAPLVVKPYLHKMTDSQFFAVMTGGLA 176
            V+  +GG LQKLL T +AES+SA+ANIF+G+ EAPL++KPY+ +MT S+ FAVM GGLA
Sbjct: 123 LVVKAVGGALQKLLNTSKAESMSASANIFLGVTEAPLLIKPYMPRMTRSELFAVMCGGLA 182

Query: 177 SVAGGTLVGYASLGVELNYLIAAAFMSAPAGLLMAKIMLPETEHV-DAAIAQDELDLPKS 235
           S+AG  L GYA LG+++ YL+AA+FM+AP GLL AK+++P+TE + DA +   E + P+ 
Sbjct: 183 SIAGTMLAGYAQLGIKMEYLLAASFMAAPGGLLFAKLLIPQTETINDAHLQLTEENQPR- 241

Query: 236 TNVVEAIADGAMSGVKIAVAVGATLLAFVSVIALLNGLLGWFGGWFGIE-LSFELIMGYV 294
            N+++A   G MSG+ +A+AVGA L +F+S++AL NG+LG  G WFG+E L+ + I+GY+
Sbjct: 242 -NLLDAATTGTMSGLSLALAVGAMLFSFISLVALFNGMLGGIGAWFGLEGLTLQQILGYL 300

Query: 295 FAPVAWLIGIPWHEAITAGSLIGNKVVVNEFVAFIQL----------IEVKEQLSAHSQA 344
           FAP+AWL+GI W+EA+ AGS IG K+V+NEF A+I L              + +S  +Q 
Sbjct: 301 FAPLAWLMGISWNEAMLAGSFIGQKIVINEFFAYINLAPYLSGDALVATTGQPMSERTQV 360

Query: 345 IVTFALCGFANISTMAILIGGLGSLVPERRSFISQYGFRAIGAGVLANLMSASIAGVILS 404
           I++FALCGFANI T+AI I G+G LVPERR+ I+  G +A+ AG+L+NLM+A+IAG+ +S
Sbjct: 361 ILSFALCGFANIGTVAIAIAGIGGLVPERRAEIASLGLKALAAGILSNLMAATIAGLFMS 420

Query: 405 L 405
           L
Sbjct: 421 L 421