Pairwise Alignments

Query, 405 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  438 bits (1127), Expect = e-127
 Identities = 225/430 (52%), Positives = 310/430 (72%), Gaps = 28/430 (6%)

Query: 4   VMSSLLGMGAILLVAWLFSTNRKNINLRTVSLALLLQIFFALLVLYVPAGKEALNRVTGA 63
           ++ SL+G+  +L + +L S N+K INLRTV  AL +Q  F   VLYVP GK+ L  ++ A
Sbjct: 3   ILMSLVGVVVLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKGMSDA 62

Query: 64  VSQLINYGQDGIGFVFGGLANGSVGFVFAINVLGIIIFFSALISGLYHLGIMPKVINLIG 123
           VS +I + Q+GIGF+FG LAN  +GF+FA+NVL +I+FFS+LI+ LY+LG+M  +I +IG
Sbjct: 63  VSSVIGFAQNGIGFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGVMQWIIRIIG 122

Query: 124 GGLQKLLGTGRAESLSATANIFVGMIEAPLVVKPYLHKMTDSQFFAVMTGGLASVAGGTL 183
           GGLQK LGT R ES+SATANIFVG  EAPLVV+P++  MT S+ FAVM GGLAS+AG  L
Sbjct: 123 GGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAVMVGGLASIAGSVL 182

Query: 184 VGYASLGVELNYLIAAAFMSAPAGLLMAKIMLPETEHVDAAIAQDELDLPKSTNVVEAIA 243
            GYA +GV + +L+AA+FM+AP GLLMAK+M PETE     + +   D  K  NV++A A
Sbjct: 183 AGYAQMGVPIEFLVAASFMAAPGGLLMAKLMHPETEVAKNDMDELPEDPDKPANVLDAAA 242

Query: 244 DGAMSGVKIAVAVGATLLAFVSVIALLNGLLGWFGGWFGIE-LSFELIMGYVFAPVAWLI 302
            GA SG+ +A+ VGA LLAFV +IA++NG++G  GGWFG+E L+ ELI+GYVF P+A+LI
Sbjct: 243 AGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYVFMPLAFLI 302

Query: 303 GIPWHEAITAGSLIGNKVVVNEFVAFIQ---------------------------LIEVK 335
           G+PW+EA+ AGS IG K++VNEFVA++                            + E +
Sbjct: 303 GVPWNEALVAGSFIGQKIIVNEFVAYLNFAPYISEAATACTSVAAEVVKGSLPLCVAETQ 362

Query: 336 EQLSAHSQAIVTFALCGFANISTMAILIGGLGSLVPERRSFISQYGFRAIGAGVLANLMS 395
             +++ +QAIV+FALCGFAN+S++AIL+GGLG++ P RR  +++ G RA+ AG LANLMS
Sbjct: 363 AVMTSRTQAIVSFALCGFANLSSIAILLGGLGAMAPNRRHDLAKMGIRAVIAGSLANLMS 422

Query: 396 ASIAGVILSL 405
           A+IAG+ L++
Sbjct: 423 ATIAGLFLAI 432