Pairwise Alignments

Query, 405 a.a., NupC/NupG family nucleoside CNT transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  405 bits (1042), Expect = e-118
 Identities = 203/402 (50%), Positives = 294/402 (73%), Gaps = 5/402 (1%)

Query: 7   SLLGMGAILLVAWLFSTNRKNINLRTVSLALLLQIFFALLVLYVPAGKEALNRVTGAVSQ 66
           S +G+  ++ + +LFS N++ I  +T++ AL LQI     V++VPAG   +  ++  V+ 
Sbjct: 6   SCIGIAVLVFIGYLFSENKRQIKFKTIAGALALQILLGAFVMFVPAGVTIIEAMSSGVNS 65

Query: 67  LINYGQDGIGFVFGGLANGSVGFVFAINVLGIIIFFSALISGLYHLGIMPKVINLIGGGL 126
           +I +   G+ FVFG LAN  +GFVF INVL ++IF SALIS LY+L +M  +IN+IGGGL
Sbjct: 66  VIAFSNSGLTFVFGDLANYKLGFVFVINVLCVVIFISALISVLYYLKVMQFIINIIGGGL 125

Query: 127 QKLLGTGRAESLSATANIFVGMIEAPLVVKPYLHKMTDSQFFAVMTGGLASVAGGTLVGY 186
            K+LGT +AESLSATANIFVG IEAP +V+P +  MT S+ FAVMTGGLASVAGGT+VGY
Sbjct: 126 SKVLGTSKAESLSATANIFVGPIEAPSMVRPLVKNMTRSELFAVMTGGLASVAGGTMVGY 185

Query: 187 ASLGVELNYLIAAAFMSAPAGLLMAKIMLPETEH--VDAAIAQDELDLPKSTNVVEAIAD 244
            +LG++  Y++ A FM+APAGLL AK++ P+TEH  V+     ++ D PK   ++EAI D
Sbjct: 186 INLGIDPKYILTACFMTAPAGLLFAKLLCPQTEHNLVNNDNKIEDADQPK--GLLEAITD 243

Query: 245 GAMSGVKIAVAVGATLLAFVSVIALLNGLLGWFGGWFGIE-LSFELIMGYVFAPVAWLIG 303
           G++ G+   + V A L++FV++IALLNG++G  G  F I+ L+ E+I+GY+ +P+A+L+G
Sbjct: 244 GSLMGMNQVITVTALLVSFVAIIALLNGIIGSIGNLFSIDKLTLEMIIGYLLSPLAFLMG 303

Query: 304 IPWHEAITAGSLIGNKVVVNEFVAFIQLIEVKEQLSAHSQAIVTFALCGFANISTMAILI 363
           +PW EAI A S+IG K+ +NEFVA+I  +EV   LS  +QAIV F+LCGFANI ++A+++
Sbjct: 304 VPWSEAIPAASIIGQKIAINEFVAYISFLEVSNTLSDKTQAIVVFSLCGFANIGSLAMVV 363

Query: 364 GGLGSLVPERRSFISQYGFRAIGAGVLANLMSASIAGVILSL 405
           GG+ ++ P++R  I+Q G R + A +LANLMS +IAG ++SL
Sbjct: 364 GGIAAMCPDKRELITQIGPRVLLAAILANLMSGTIAGALVSL 405