Pairwise Alignments

Query, 487 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., oxidoreductase, FAD-binding (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.1 bits (131), Expect = 4e-12
 Identities = 88/371 (23%), Positives = 152/371 (40%), Gaps = 78/371 (21%)

Query: 3   TKITDIVIIGAGPVGLMSAYLAQRCGLNALIIDKSA-------EPLQVGRADALNARTLQ 55
           T+  D++++G G VG  +A    + GL+  +I+  A       + L V R  A++  +  
Sbjct: 14  TQSFDVILVGGGMVGAATAIGLAQQGLHIAVIESFAPEAYSPEQALDV-RVSAISVASEH 72

Query: 56  LLEVAKLFDDLYPLGKPCNTSSVWANGHFISRQSSWWEALEGCLHK-HFLMLGQSFVEQL 114
           LLE     D L  +           N  ++  ++  WE L+GC+ + H   +G S +  +
Sbjct: 73  LLEQLGALDSLLKM----------RNVPYLGLET--WE-LDGCITQFHSSQIGASHLGHI 119

Query: 115 LDKKLLEA----NAPVWRNTSV---DNIELNQAGCLT---HLSNGELIQSRFVIGADGSQ 164
           ++ +L++         W N  +   + +     G  T   HL +G L++++ ++GADG+ 
Sbjct: 120 VENRLVQLALWEQMQQWENIRLFCPERVAHFARGVDTVSVHLQSGCLLEAKLLVGADGAN 179

Query: 165 SFVRRHFNVPFHIVRPEIIWAVIDGVIDSDFPKVPEIIVFQAE--TSDVAW--------- 213
           S VR+              WA I G+   D+ +   +I  Q      DV W         
Sbjct: 180 SHVRQ--------------WAGI-GISGWDYAQSAMLINIQTTQGQQDVTWQQFTPSGPR 224

Query: 214 --IPREG---------EIDRFYVRMDTHDFTLEQAIAKINRAMAPHQLGFKEVVWF-SQF 261
             +P  G         + +R    M  ++  L + I    R   P +L    +V     F
Sbjct: 225 SLLPLPGNHASLVWYDDANRIKQLMQLNNKQLAEQI----RQHFPARLDSDFIVEAKGSF 280

Query: 262 AVKESVAEHYSVDDRVFLAGDACHVHSVNGGQGLNTGVADAFNLIWKLSMVI---KGQAS 318
           A+    A+ Y V   V + GDA H  +   GQG+N G  D   L+  +   +   K   S
Sbjct: 281 ALTRRHAQVY-VKPNVVILGDAAHTINPLAGQGVNLGFKDVEALLSVIKAALTEDKPWWS 339

Query: 319 PALLKSYHAER 329
             +L  Y A+R
Sbjct: 340 TEVLGKYQAKR 350