Pairwise Alignments

Query, 655 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  208 bits (529), Expect = 7e-58
 Identities = 155/480 (32%), Positives = 245/480 (51%), Gaps = 37/480 (7%)

Query: 173 IRMINENKQQLLYFFAAILLMLILLSYMTYRSADYQ-QFLAWHDPLTRLKNRNFIVKKLK 231
           IR+I ++  ++ ++ A      +       + ++++  +LA HDPLT L NR     + +
Sbjct: 174 IRVIRDDSGEISHYVA------VFSDISAIKDSEHELAYLAHHDPLTGLPNRLLFSDRTE 227

Query: 232 KRRRNQQ---EPIALILFDLNRFKELNDTMGYAFGDQLLINIAELLTQRCRSF---AYQC 285
           +   + Q      AL+L DL+ FK +ND++G+  GD+LL  +AE    R R         
Sbjct: 228 QALASAQLHKRGCALLLLDLDHFKNINDSLGHNVGDELLKGVAE----RFRGLFAPGVTL 283

Query: 286 ARIGADEFAVLLHPCT--GNADFFIRNLWNDLTKLVQENDPTKRLSVAMGVVTCQTQDFT 343
           AR+G DEFAVL+  C+  G A    R + + L + ++ +D    ++ ++G+         
Sbjct: 284 ARLGGDEFAVLVENCSQPGQAAALARRILDALKEPLRFDDHALFINASIGISLFP----- 338

Query: 344 ESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESAYNKKRILAEQLQQLLLDPNQ 403
                L A  LL NAD AL  AK A       YT ++ +   ++  +A +L++ L    Q
Sbjct: 339 --GDALSAGQLLRNADSALFKAKSAGRDGYALYTEELTAHAQQRVEIAFELRRAL---QQ 393

Query: 404 SSLYLSYQPILSRDPDRL-GCEALIRWQHSEFGYINPQYLIEIAEEYGLGKKLGAWIMQQ 462
             L + YQP+      RL G EAL+RW+H   G ++P   I IAE  GL  ++ AW+M Q
Sbjct: 394 QELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPAEFIPIAERTGLIAQVDAWVMDQ 453

Query: 463 VYLALQNDWKPHNRRLD-VSINLSNSLFDET-LPTLVTTIFGHHENFLN--AIILELTET 518
               +   W+     L  V++N+S+ LF    L   V  +   H+  L+   + LE+TE+
Sbjct: 454 ACRQMCQ-WQQAGVALSFVAVNVSSRLFARRELYDQVAQVL--HDTGLDPGCLELEVTES 510

Query: 519 MTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSLYQLNHLKFSKLKIDKSFVDNMNQNQ 578
             +DD   +L  +  L ++ VR A+DDFGTG+SSL +L  L   KLKID+ FV  +  ++
Sbjct: 511 AVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDE 570

Query: 579 QQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQLGVDEFQGYYFSRPITKTEFATFC 638
             A  +  I+ L+H +GMQV AEGIEQ  Q   L     +  QGY+F RP+   +    C
Sbjct: 571 DDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACELGQGYWFGRPVAAAQLDWHC 630