Pairwise Alignments

Query, 655 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1003 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  199 bits (506), Expect = 5e-55
 Identities = 133/440 (30%), Positives = 228/440 (51%), Gaps = 33/440 (7%)

Query: 209 QFLAWHDPLTRLKNRNFIVKKLKKRRRNQQEP---IALILFDLNRFKELNDTMGYAFGDQ 265
           +F+  HD LT L NR  +  +LK+     Q     + ++  DL++FK +ND++G++ GD+
Sbjct: 543 RFMGDHDALTGLPNRTLLEDRLKQAMLYAQRYNRLVTVVFLDLDKFKLVNDSLGHSAGDE 602

Query: 266 LLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADFF---IRNLWNDLTKLVQEN 322
           LL  +A+ +   C        R+G DEF ++L     + D     +  +   + + +Q +
Sbjct: 603 LLKTVAQRMLG-CVRRTDTVVRLGGDEFVIILFDQPSDLDGVTPVLHKIQEAILRPIQLS 661

Query: 323 DPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIES 382
             T  ++ +MG+ T  T D T++ +      LL+NAD A+  AK+       +YT ++ +
Sbjct: 662 GHTLHVTCSMGLATYPT-DGTDTDT------LLSNADAAMYRAKELGRNSFQFYTSEMNN 714

Query: 383 AYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDRL-GCEALIRWQHSEFGYINPQY 441
               K  + + L+  L   N     L YQP +     ++ G EALIRWQH E G ++P  
Sbjct: 715 KVQGKLAMQDGLRSAL---NNDEFLLLYQPQVDLQSGQIIGVEALIRWQHPELGMVSPIK 771

Query: 442 LIEIAEEYGLGKKLGAWIMQQVYLALQND------WKPHNRRLDVSIN--LSNSLFDETL 493
            I  AEE GL   +G W++       QN       W P    +++S    +   L D  +
Sbjct: 772 FIPQAEETGLIVPIGDWVIHSA--CRQNKAWQDAGWPPITMSVNISARQFIERDLIDRVM 829

Query: 494 PTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSL 553
             L  +  G    +L    LELTE++ + D  Q+++ +++L+ M +  ++DDFGTG+SSL
Sbjct: 830 HALQES--GLDPMYLE---LELTESLIMQDLQQAISKMKALQAMGISLSIDDFGTGYSSL 884

Query: 554 YQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLK 613
             L     ++LKID+SFV ++  N+       ++++L H+L ++V+AEG+E   Q   L+
Sbjct: 885 AALKSFPIARLKIDQSFVRDLPDNENDKAIATAVISLGHKLNLKVIAEGVETEEQQTFLR 944

Query: 614 QLGVDEFQGYYFSRPITKTE 633
             G DE QGY+FS+ ++  E
Sbjct: 945 DNGCDEIQGYFFSKAVSAQE 964