Pairwise Alignments

Query, 655 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  209 bits (531), Expect = 4e-58
 Identities = 152/467 (32%), Positives = 233/467 (49%), Gaps = 28/467 (5%)

Query: 172 NIRMINENKQQLLYFFAAILLMLILLSYMTYRSADYQQFLAWHDPLTRLKNRNFIVKKLK 231
           N+R I++N+ QL ++ A    +  L      RS +    LA +DPL  L NR    ++ K
Sbjct: 170 NLRCIHDNQGQLSHYVAVFSDLSALK-----RSREELDQLAHYDPLVNLPNRLLFTERAK 224

Query: 232 K---RRRNQQEPIALILFDLNRFKELNDTMGYAFGDQLLINIAELLTQRCRSFAYQCARI 288
           +   R R  +   AL+L DL+ FK++N+++G++ GD LL  ++  L++          R+
Sbjct: 225 QDLERARAHKRSGALLLIDLDHFKDINESLGHSLGDALLQAVSTRLSEHLEK-GMTLGRL 283

Query: 289 GADEFAVLLHPCTG----NADFFIRNLWNDLTKLVQENDPTKRLSVAMGVVTCQTQDFTE 344
           G DEFA+L   C G     A      + + L +     D     S ++G+V      +  
Sbjct: 284 GGDEFALL---CEGYGAEKATALALRILDRLNESFHIGDQELFSSASIGIVL-----YPY 335

Query: 345 SSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESAYNKKRILAEQLQQLLLDPNQS 404
            +    A  L+ NAD AL  AK +      +Y+ ++ S   ++  L   L+Q L    Q 
Sbjct: 336 PTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELTSQARQRVELVTALRQAL---EQG 392

Query: 405 SLYLSYQPILS-RDPDRLGCEALIRWQHSEFGYINPQYLIEIAEEYGLGKKLGAWIMQQV 463
            L L YQPI   R     G EAL+RWQH E G I P   I IAEE GL   +  W+++Q 
Sbjct: 393 QLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIPIAEETGLISAIDHWVLEQA 452

Query: 464 YLALQNDWKPHNRRLD-VSINLSNSLFDE-TLPTLVTTIFGHHENFLNAIILELTETMTI 521
               + +W      L  +++N+S+ LF    L   V TI          + LE+TE+  +
Sbjct: 453 CNQAR-EWLGQGHPLGFIAVNISSRLFGNGELDLQVATILARSGLEARHLELEITESAVM 511

Query: 522 DDFPQSLAIIESLEKMKVRFALDDFGTGWSSLYQLNHLKFSKLKIDKSFVDNMNQNQQQA 581
            D   +L +++ L  + V+ A+DDFGTG+SSL +L  +   KLKID+ FV  +  ++  A
Sbjct: 512 QDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHKLKIDQGFVRGLPDDRDDA 571

Query: 582 IFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQLGVDEFQGYYFSRP 628
               S++ L+H LG++VVAEGIE   Q   L     D  QGY F+RP
Sbjct: 572 AITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGYGFARP 618