Pairwise Alignments

Query, 655 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 852 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  203 bits (516), Expect = 3e-56
 Identities = 146/434 (33%), Positives = 228/434 (52%), Gaps = 27/434 (6%)

Query: 209 QFLAWHDPLTRLKNRNFIVKKLKKRRRNQQE--PIALILFDLNRFKELNDTMGYAFGDQL 266
           Q+L+ HDPLT L NR+ +   L++   + +    + L+  DL+RFK +NDT+G+A GD++
Sbjct: 428 QYLSQHDPLTGLPNRSRLRDYLEQNLASLRSGSTMTLLYIDLDRFKPVNDTLGHAAGDEV 487

Query: 267 LINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADFFIRNLWNDLTKLVQENDPTK 326
           L+ +A  L +R R      AR+G DEF V LH  + + D  I  L N + + +      +
Sbjct: 488 LMGVASRLRERTRD-GDLVARLGGDEFVVALHRMSEDED--IDRLCNRIIEALSSPFAYE 544

Query: 327 RLSVAMGV---VTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESA 383
              +++G    V     D T+      A+ LL  AD+AL  AK A  G    Y RD++  
Sbjct: 545 NHQISIGASIGVALAPMDATQ------ANELLRCADIALYQAKDAGRGTWRAYGRDMDQR 598

Query: 384 YNKKRILAEQLQQLLLDPNQSSLYLSYQP-ILSRDPDRLGCEALIRWQHSEFGYINPQYL 442
            +++    EQL+  + + +   L + YQP  LS+    +G EAL+RW H   G + P+  
Sbjct: 599 LHERLRREEQLRVAIAEQH---LEVHYQPRYLSQGMRIIGAEALVRWHHPTHGLLLPEQF 655

Query: 443 IEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLDVSINLSN-SLFDETLPTLVTTIF 501
           I +AEE GL   LG W++QQ        W      + VS+NLS   L D+ L   ++   
Sbjct: 656 IPLAEETGLIIPLGRWVLQQACQQAAT-WPVD---MVVSVNLSPLQLHDDRLLDEISQAL 711

Query: 502 GHHENFL--NAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSLYQLNHL 559
             HEN L    + LE+TE+  + +   +L +++ ++ + V  A+DDFGTG+SSL  L H 
Sbjct: 712 --HENGLAGERLELEITESALLQETQSTLDLLKRIKALGVHLAVDDFGTGYSSLTSLRHY 769

Query: 560 KFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQLGVDE 619
            F  +KID SFV  + Q+ +    + +++ L   L M+V AEG+E   QL  L   G  E
Sbjct: 770 PFDVIKIDNSFVAGIEQSMEDHSIVRALIELGRGLQMRVTAEGVETEEQLRLLTDDGCTE 829

Query: 620 FQGYYFSRPITKTE 633
            QG++ S P+   E
Sbjct: 830 VQGFHMSLPMPAEE 843