Pairwise Alignments

Query, 655 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  192 bits (489), Expect = 3e-53
 Identities = 141/448 (31%), Positives = 235/448 (52%), Gaps = 27/448 (6%)

Query: 211 LAWHDPLTRLKNRNFIVKKLK---KRRRNQQEPIALILFDLNRFKELNDTMGYAFGDQLL 267
           +A  DPLT L NR  +++ +    +R R  +   AL+  DL+RFK +ND++G+A GDQ L
Sbjct: 248 MATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRFKNINDSLGHALGDQFL 307

Query: 268 INIAELLTQRCRSFAYQCARIGADEFAVL---LHPCTGNADFFIRNLWNDLTKLVQENDP 324
             IA +L +R        +R+G DEF +L   +H     ADF +  L   L   +Q N+ 
Sbjct: 308 ARIARIL-ERVVGDKGSVSRLGGDEFVILADSVHSPDQAADF-VDKLLVQLNVPIQLNEH 365

Query: 325 TKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESAY 384
               + ++G+       + E  S   A  L+ +AD+A+  AK A   Q  ++ + +    
Sbjct: 366 AIHPAASIGISI-----YPEDGSS--AEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 385 NKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDRL-GCEALIRWQHSEFGYINPQYLI 443
              R+  E      L  N+  LY  +QP L     ++ GCEALIRWQ  +   I+P   I
Sbjct: 419 -AVRLRTEASLHDALKNNEFLLY--FQPKLDLQTGKITGCEALIRWQ-KDGRLISPMSFI 474

Query: 444 EIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLDVSINLSNSLF-DETLPTLVTTIFG 502
            +AEE G+   +G W+++Q    L+   K +N  + ++IN+++  F D +L + +  +  
Sbjct: 475 PVAEETGIIIPIGRWVIEQSCRVLREWQKKYNYAIPIAINVASQQFADASLVSDIKQMAL 534

Query: 503 HHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSLYQLNHLKFS 562
            ++     + +E+TET  ++D   ++  +E L+      A+DDFGTG+SSL  L HL  +
Sbjct: 535 RYQIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPIT 594

Query: 563 KLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQLGVDEFQG 622
            +KID+ FV ++  +   A   ++I+ L  QL + +VAEGIE   QL+ LK       QG
Sbjct: 595 TMKIDRCFVSDLPGDSAIA---STILMLGKQLNLTIVAEGIENELQLDWLKSNECQIGQG 651

Query: 623 YYFSRPITKTEFATFCDHYFSSENTSLS 650
           +YFS+P+ + +F      Y +S+  ++S
Sbjct: 652 FYFSQPLPQADFEAL---YMASQTATIS 676