Pairwise Alignments

Query, 655 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  194 bits (494), Expect = 7e-54
 Identities = 140/440 (31%), Positives = 228/440 (51%), Gaps = 33/440 (7%)

Query: 211 LAWHDPLTRLKNR---NFIVKKLKKRRRNQQEPIALILFDLNRFKELNDTMGYAFGDQLL 267
           LA HD LT+L NR      + +   R +   + +A+IL DL+ FK +NDT+G+  GD LL
Sbjct: 141 LAEHDSLTKLMNRYGFELCLNRAIARVKRSNDLLAVILLDLDDFKAINDTLGHQTGDILL 200

Query: 268 INIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADFFIRNLWNDLTKLVQE----ND 323
           + +A  L+   R      AR+G DEF VL+     +  +F   + N L K  +E     D
Sbjct: 201 VKVASRLSTVLRD-GDVIARLGGDEFVVLV--TDNDYKYFPMIVANRLLKAFEEVFCLGD 257

Query: 324 PTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESA 383
               +  ++GV       + E++S   +S L+  AD+A+  AKK    Q+ +Y+  ++  
Sbjct: 258 NDVMIGASIGVAF-----YNEAASD--SSELMKCADIAMYRAKKMGRNQIQFYSEALDKE 310

Query: 384 YNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDRLGCEALIRWQHSEFGYINPQYLI 443
              +  +   L+ + L  NQ  +Y   Q + ++    +G EALIRW H E G I+P   +
Sbjct: 311 VRYRNHIESSLR-IALRLNQFKVYYQVQ-VDAQTHQMVGMEALIRWLHPEDGLISPDQFL 368

Query: 444 EIAEEYGLGKKLGAWIMQQVYLALQ---NDWKPHNRRLDVSINLSNS------LFDETLP 494
            IAEE GL +++G W++ +     Q   N   P      +++NLS S      L+++   
Sbjct: 369 PIAEEIGLMEEIGDWVLFETCRQAQYWLNQLAPTGHSFTIAVNLSASQIGHVDLYEKIAH 428

Query: 495 TLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSLY 554
            L  T          A+ LE+TE   I++  +   I++ + ++ VRFALDDFGTG+SSL 
Sbjct: 429 VLKVTGLTP-----GALELEITENCLIEEPHEHAKILDKIAQLGVRFALDDFGTGFSSLE 483

Query: 555 QLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQ 614
            +     S LKIDKSF+ + +++++    +++++N ++   +  VAEGIE L Q E    
Sbjct: 484 HIKLFPISVLKIDKSFIASYDKDEKDTRLLSALLNFAYGFNVTSVAEGIETLEQAEFCTV 543

Query: 615 LGVDEFQGYYFSRPITKTEF 634
              +  QGY FSRP+  +EF
Sbjct: 544 RHCNLLQGYLFSRPLEASEF 563