Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Pseudomonas fluorescens FW300-N2E2

 Score =  107 bits (267), Expect = 4e-28
 Identities = 90/329 (27%), Positives = 147/329 (44%), Gaps = 21/329 (6%)

Query: 2   FKPLTLIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKG----IAASLLEKRVNE 57
           FK   LIAA  LA  +  A A      + IK +     D HPKG    +A   + K + +
Sbjct: 3   FKRTLLIAALPLAFLAQAAHA------LDIKIA-----DIHPKGYPTVVAEESMGKTLEK 51

Query: 58  EMNGKACMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDV 117
           E NG+   + FP   L  + +V+E +  G VQ++  SL           +F++PF+F D 
Sbjct: 52  ESNGELKFKYFPGGVLGSEKEVIEQMQTGAVQMSRVSLGIVGPVVPDVNVFNMPFIFRDQ 111

Query: 118 DAVDRFQSSAKGEELKNAMTRR--GVKGLEFWHNGMKQISANKPILVPADAKGLKFRVQA 175
             +        G+ + + +T    G+  L +   G + +   KP+    D KG+K RVQ 
Sbjct: 112 AHMRAVIDGDVGDAILDRITNSEFGLVALAWMDGGTRNLYTKKPVHKLEDLKGMKIRVQG 171

Query: 176 SDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHG 235
           + + +  F  +GAN   M   E +  LQT VIDG EN    +    +++     + T H 
Sbjct: 172 NPMFIETFNAMGANGIAMDTGEIFSALQTGVIDGAENNPPTLLEHNHYQNAKYYSLTGHL 231

Query: 236 ILDYLVVTSSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTL 295
           IL   +V S   W+ L  + +D   K       E     +K    +++ +  AG  V  +
Sbjct: 232 ILPEPIVMSKITWNKLTPEQQDMVKKAAKAAQAEERVLWDKKSTASEEKLKAAG--VEFI 289

Query: 296 TPEQRQQWVDALKPVWQKFEKDIGADLIE 324
           T + ++ + DA  P+  K+     ADLI+
Sbjct: 290 TVD-KKPFYDATAPIRAKYGAPY-ADLIK 316