Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Pseudomonas fluorescens FW300-N2E2

 Score =  140 bits (354), Expect = 3e-38
 Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 4/289 (1%)

Query: 38  NTDKHPKGIAASLLEKRVNEEMNGKACMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSK 97
           N  +HP+G  A      ++E+  GK  +++FP  TL  D + + AL  G + +   +   
Sbjct: 40  NVKEHPQGQGAQKFADLLSEKSGGKIKVRLFPGGTLGGDVQTVSALQGGTLDITVLNSGI 99

Query: 98  FEKFTKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRRGVKGLEFWHNGMKQISAN 157
                  Y + D PFLF +V+          G++L   +  +G+  L +W  G + ++ +
Sbjct: 100 LAAQAPDYAMLDFPFLFNNVEEAHAVIDGPVGQKLAVQLDSKGLVALGYWDLGFRNLTNS 159

Query: 158 K-PILVPADAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSN 216
           K P+    D +GLK RV  S + +  F  +GANP  M+F E Y GL+   IDGQEN ++ 
Sbjct: 160 KHPVTKLEDMQGLKIRVIQSPIYLETFSALGANPVPMAFPEVYTGLEQHTIDGQENPFTV 219

Query: 217 IYGQKYFEVQDGTTETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEVTIERNAESNK 276
           I G K++EVQ   + T H      ++ S K W+ L  D +        E   ++      
Sbjct: 220 IEGNKFYEVQKYLSVTGHIFNPQSLIISQKTWNRLNDDEKAMIRSAATEA--QKFQREVT 277

Query: 277 VEELNKQYIIEAGGV-VRTLTPEQRQQWVDALKPVWQKFEKDIGADLIE 324
              ++K  +  AG + V  +TP ++ ++ + +KPV  KF K + ADL++
Sbjct: 278 AASMDKAKVTLAGAMTVNEVTPAEKDRFRERVKPVVDKFAKSLDADLVK 326