Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., D-gluconate TRAP transporter, periplasmic component (from data) from Pseudomonas stutzeri RCH2

 Score =  151 bits (381), Expect = 3e-41
 Identities = 91/329 (27%), Positives = 166/329 (50%), Gaps = 3/329 (0%)

Query: 6   TLIAASILAVTSFN-AAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKAC 64
           TL AA + +  S   A A  D    +I+F +  N D + +G AA LL + V +   GK  
Sbjct: 8   TLAAALLGSTLSLGYAQAADDIRPRMIRFGYGLNEDSN-QGRAAKLLAEEVAKASGGKLK 66

Query: 65  MQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQ 124
           ++ F +++L  DD++  AL+ G  ++   S +     +K+  ++D PFLF D    D+  
Sbjct: 67  VRTFASASLGSDDQMQNALIGGAQEMMVGSTATLVGISKEMAVWDTPFLFTDPRQADQVL 126

Query: 125 SSAKGEELKNAMTRRGVKGLEFWHNGMKQISAN-KPILVPADAKGLKFRVQASDVLVAQF 183
               G ++ + +  +G+ GL +W NG + ++ + +PI    D  G+K RV  + V +  F
Sbjct: 127 DGPVGRQVMDKLEEKGLVGLVYWENGFRNVTNSARPIEKLEDFNGVKLRVMPNPVFIDTF 186

Query: 184 EQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVT 243
           +++GAN   + F+E +  L+TK +DGQEN ++ I   K++EVQ   + TNH    ++V  
Sbjct: 187 KRMGANAVPLPFSELFTALETKAVDGQENPFNTILSSKFYEVQKYLSVTNHVYSPWIVTV 246

Query: 244 SSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTPEQRQQW 303
           S +WWDGL A  +    +   +       ++ +        + E G  +  ++P++ Q+ 
Sbjct: 247 SKRWWDGLSATEQGILMEAAEKARDAEREDTRREASQALAALKERGMQINEVSPDEIQRM 306

Query: 304 VDALKPVWQKFEKDIGADLIEAALAANQK 332
            +  +P  Q     +G +L +   A  +K
Sbjct: 307 REKAQPAIQTVIDAVGQELFDQVQAEVEK 335