Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score =  131 bits (329), Expect = 3e-35
 Identities = 87/297 (29%), Positives = 136/297 (45%), Gaps = 19/297 (6%)

Query: 42  HPKGIAASLLEKRVNEEMNGKACMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKF 101
           HP  I       ++ EE  G+  + +FP+S L +D + L  L NG  +  + S       
Sbjct: 42  HPLNIRLKEAADKILEETGGRLKINIFPSSQLGNDTETLSQLRNGATEFFSLSPLILSTL 101

Query: 102 TKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRRGVKGLE-FWHNGMKQI-SANKP 159
                I  + F F D D V +      G   +  + ++G+  +E  W NG +QI S+NKP
Sbjct: 102 VPNAAISGIGFAFPDYDTVWKAMDGELGAYARGEIEKKGLVPMEKIWDNGFRQITSSNKP 161

Query: 160 ILVPADAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYG 219
           I  P D KG K RV  S +  + F   GA P  ++FAE Y  L T  +DGQEN  +    
Sbjct: 162 INTPEDLKGFKIRVPPSPLWQSMFTAFGAAPTTINFAEVYTALSTGTVDGQENPLAIAST 221

Query: 220 QKYFEVQDGTTETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEE 279
            K +EVQ     TNH    + ++ + + W+ LP D+R+  AK LNE  I +  ++ KV +
Sbjct: 222 AKLYEVQKHCAMTNHMWDGFWMLANKQAWETLPEDIREIAAKHLNESAIAQRTDTAKVND 281

Query: 280 LNKQYIIEAGGVVRTLTPEQRQQWVDALK--------------PVWQKFEKDIGADL 322
             ++ + ++G    T T   +  + + L+                W   EK +G  L
Sbjct: 282 TVREQLTQSG---MTFTDPDKAAFRETLRSAGFYAEWKGKFGDEAWAILEKAVGTSL 335